| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| hoxb6b | 0.387 | XLOC-003692 | -0.022 |
| hoxb8a | 0.356 | ahcy | -0.022 |
| hoxb6a | 0.286 | abhd6a | -0.022 |
| hoxc3a | 0.214 | en2b | -0.022 |
| hoxc6a | 0.213 | XLOC-003690 | -0.022 |
| hoxb5b | 0.211 | tcf7l2 | -0.021 |
| hoxc8a | 0.190 | actb2 | -0.020 |
| hoxb5a | 0.167 | lfng | -0.020 |
| hoxb1b | 0.157 | aldob | -0.019 |
| hoxc1a | 0.147 | sox2 | -0.019 |
| hoxb7a | 0.135 | eef1da | -0.019 |
| hoxb9a | 0.127 | her15.1 | -0.019 |
| hoxc5a | 0.127 | XLOC-003689 | -0.019 |
| hoxa3a | 0.121 | id1 | -0.019 |
| dhrs3b | 0.112 | notch3 | -0.018 |
| hoxb3a | 0.102 | otx1 | -0.018 |
| si:dkey-81p22.11 | 0.099 | atp5mc3b | -0.018 |
| hoxc4a | 0.098 | otx2a | -0.018 |
| skap1 | 0.079 | tubb4b | -0.018 |
| BX936342.2 | 0.076 | ncalda | -0.018 |
| hoxd3a | 0.071 | tuba8l4 | -0.018 |
| hoxa5a | 0.069 | atp5mc3a | -0.018 |
| CR751227.2 | 0.063 | tuba8l | -0.018 |
| raraa | 0.059 | ptprn2 | -0.018 |
| hoxc6b | 0.057 | si:ch211-156b7.4 | -0.018 |
| AL954672.1 | 0.055 | zgc:56493 | -0.018 |
| pik3r3b | 0.054 | hmgb2a | -0.018 |
| XLOC-033650 | 0.052 | LOC798783 | -0.017 |
| hoxa9a | 0.052 | CR751602.2 | -0.017 |
| znf704 | 0.051 | cd82a | -0.017 |
| meis2b | 0.049 | boc | -0.017 |
| zfhx4 | 0.048 | pou3f3a | -0.017 |
| tmie | 0.048 | ranbp1 | -0.017 |
| meis1b | 0.047 | celf2 | -0.017 |
| nanos1 | 0.047 | pax7a | -0.017 |