| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| hoxd4a | 0.200 | hoxb9a | -0.101 |
| hoxb5b | 0.189 | hoxc9a | -0.085 |
| rxrgb | 0.170 | hoxa9a | -0.085 |
| rbp5 | 0.152 | hoxd9a | -0.079 |
| CR812832.1 | 0.147 | hoxa9b | -0.078 |
| phox2bb | 0.140 | hoxb10a | -0.078 |
| dhrs3b | 0.137 | hoxa10b | -0.074 |
| hoxc1a | 0.126 | hoxc8a | -0.069 |
| hoxc4a | 0.120 | hoxa11b | -0.066 |
| fam117ab | 0.120 | hoxb7a | -0.065 |
| tm6sf2 | 0.120 | hoxd10a | -0.062 |
| raraa | 0.117 | hoxc10a | -0.059 |
| hoxb3a | 0.110 | elavl4 | -0.059 |
| hoxb5a | 0.107 | hoxd12a | -0.056 |
| flrt3 | 0.098 | ldlrad2 | -0.055 |
| hoxa5a | 0.097 | snap25a | -0.054 |
| efnb3b | 0.093 | stx1b | -0.054 |
| cyp27c1 | 0.088 | cplx2 | -0.052 |
| rhbdl3 | 0.084 | stxbp1a | -0.051 |
| hoxb6a | 0.083 | vamp2 | -0.051 |
| hoxb6b | 0.082 | ndrg2 | -0.051 |
| angptl4 | 0.075 | sncgb | -0.051 |
| CABZ01075068.1 | 0.073 | cplx2l | -0.050 |
| crabp2a | 0.073 | rbfox3a | -0.050 |
| hmgb2a | 0.071 | sncb | -0.050 |
| rap1gap | 0.071 | hoxd11a | -0.049 |
| LOC798783 | 0.071 | map1aa | -0.049 |
| nkx2.9 | 0.070 | rtn1b | -0.048 |
| ccnd1 | 0.069 | si:dkeyp-110a12.4 | -0.048 |
| insm1a | 0.069 | lhx1a | -0.048 |
| sox3 | 0.068 | tmem59l | -0.047 |
| hoxc5a | 0.067 | fez1 | -0.047 |
| si:ch211-286o17.1 | 0.067 | rbfox1 | -0.047 |
| nrarpb | 0.066 | gng3 | -0.046 |
| btg3 | 0.065 | ywhag2 | -0.046 |