| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| hoxc3a | 0.374 | marcksl1b | -0.124 |
| hoxb7a | 0.344 | FQ323156.1 | -0.106 |
| gdf11 | 0.307 | krt8 | -0.105 |
| hoxc8a | 0.307 | si:ch73-23l24.1 | -0.098 |
| hoxa9a | 0.291 | zgc:113232 | -0.097 |
| hoxd10a | 0.289 | krt18a.1 | -0.094 |
| hoxd9a | 0.285 | epyc | -0.089 |
| BX001014.2 | 0.282 | col11a2 | -0.089 |
| BX005254.3 | 0.281 | col9a2 | -0.089 |
| cdx4 | 0.275 | zmp:0000000760 | -0.088 |
| fgf4 | 0.265 | cmn | -0.088 |
| fgf20a | 0.263 | si:ch211-152c2.3 | -0.085 |
| hoxb9a | 0.263 | col9a1b | -0.084 |
| aplnr2 | 0.253 | ucmab | -0.083 |
| hoxb10a | 0.246 | shisa2a | -0.082 |
| nradd | 0.245 | si:ch211-243g18.2 | -0.081 |
| si:ch211-129o18.4 | 0.238 | pitx2 | -0.081 |
| hoxa9b | 0.232 | epcam | -0.081 |
| sst6 | 0.227 | fgfr3 | -0.080 |
| sall4 | 0.227 | chrd | -0.077 |
| her12 | 0.223 | matn3a | -0.077 |
| alpi.1 | 0.222 | gas2b | -0.077 |
| emid1 | 0.221 | ehd2b | -0.077 |
| fzd10 | 0.217 | agtrap | -0.076 |
| fn1a | 0.216 | fscn1a | -0.075 |
| hoxd12a | 0.216 | cav2 | -0.075 |
| parvb | 0.213 | gsc | -0.075 |
| hoxd11a | 0.213 | col2a1a | -0.075 |
| myclb | 0.211 | si:ch73-160h15.3 | -0.075 |
| tcf15 | 0.207 | ddx4 | -0.075 |
| wnt5b | 0.206 | slc3a2a | -0.074 |
| XLOC-042222 | 0.206 | cst3 | -0.074 |
| hpcal4 | 0.200 | gadd45ba | -0.073 |
| fam49al | 0.200 | cfl1l | -0.073 |
| b3gnt7l | 0.199 | cnmd | -0.072 |