| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| hoxc8a | 0.277 | prdx2 | -0.126 |
| hoxc3a | 0.272 | hbae1.1 | -0.115 |
| hoxb7a | 0.253 | hbbe1.3 | -0.111 |
| hoxb9a | 0.247 | hbae3 | -0.111 |
| cdx4 | 0.246 | hbbe1.1 | -0.107 |
| hoxb10a | 0.231 | hbae1.3 | -0.107 |
| BX005254.3 | 0.230 | hbbe2 | -0.106 |
| hoxd10a | 0.212 | blvrb | -0.103 |
| BX001014.2 | 0.208 | cahz | -0.102 |
| hoxd9a | 0.201 | hemgn | -0.097 |
| hoxc9a | 0.191 | hbbe1.2 | -0.092 |
| hoxa9a | 0.190 | alas2 | -0.092 |
| dact2 | 0.178 | tspo | -0.091 |
| pax8 | 0.178 | slc4a1a | -0.086 |
| mnx1 | 0.177 | nt5c2l1 | -0.083 |
| BX927395.1 | 0.175 | zgc:163057 | -0.082 |
| ndnf | 0.171 | gpx1a | -0.082 |
| etv2 | 0.171 | epb41b | -0.080 |
| hoxa9b | 0.167 | creg1 | -0.079 |
| hoxb1b | 0.165 | si:ch211-250g4.3 | -0.079 |
| lin28a | 0.158 | tmem14ca | -0.076 |
| lbx2 | 0.157 | si:ch211-207c6.2 | -0.075 |
| wu:fb97g03 | 0.157 | nmt1b | -0.074 |
| hoxb3a | 0.156 | fth1a | -0.073 |
| fbln1 | 0.156 | plac8l1 | -0.071 |
| BX469925.3 | 0.156 | tmod4 | -0.067 |
| vox | 0.155 | sptb | -0.064 |
| hoxa11b | 0.154 | hdr | -0.064 |
| hoxa10b | 0.154 | si:ch211-227m13.1 | -0.064 |
| colec12 | 0.152 | klf1 | -0.062 |
| hoxb8a | 0.151 | hbae5 | -0.062 |
| postnb | 0.151 | tfr1a | -0.061 |
| hoxa11a | 0.150 | rfesd | -0.060 |
| npas4l | 0.149 | uros | -0.060 |
| id1 | 0.149 | mcl1a | -0.059 |