| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| hoxb6b | 0.571 | id1 | -0.044 |
| hoxb5a | 0.499 | aldob | -0.044 |
| hoxb5b | 0.478 | en2b | -0.043 |
| hoxb8a | 0.434 | hmgb2a | -0.043 |
| hoxc3a | 0.308 | sox19a | -0.042 |
| hoxc5a | 0.299 | pcna | -0.042 |
| hoxb8b | 0.286 | anp32b | -0.041 |
| hoxc1a | 0.284 | XLOC-003692 | -0.040 |
| hoxc6a | 0.262 | XLOC-003690 | -0.039 |
| hoxc4a | 0.245 | ccnd1 | -0.039 |
| hoxa5a | 0.231 | snrpb | -0.038 |
| hoxa3a | 0.220 | cldn5a | -0.038 |
| hoxb1b | 0.217 | sox2 | -0.038 |
| hoxb3a | 0.198 | sox3 | -0.038 |
| dhrs3b | 0.174 | XLOC-003689 | -0.037 |
| hoxc8a | 0.149 | msi1 | -0.037 |
| hoxb7a | 0.147 | eef1a1l1 | -0.037 |
| BX936342.2 | 0.144 | ranbp1 | -0.036 |
| hoxd3a | 0.123 | hmgb2b | -0.036 |
| si:dkey-81p22.11 | 0.117 | nop58 | -0.036 |
| raraa | 0.109 | si:ch73-281n10.2 | -0.036 |
| CR751227.2 | 0.107 | otx2a | -0.036 |
| vim | 0.098 | sept12 | -0.036 |
| zfhx3 | 0.093 | si:ch73-30b17.2 | -0.036 |
| tmie | 0.092 | her15.1 | -0.035 |
| hoxb9a | 0.092 | mcm6 | -0.035 |
| pik3r3b | 0.090 | nop56 | -0.035 |
| skap1 | 0.090 | notch3 | -0.035 |
| zfhx4 | 0.087 | abhd6a | -0.035 |
| hoxd4a | 0.084 | lfng | -0.035 |
| tshz2 | 0.083 | tuba8l4 | -0.035 |
| meis1b | 0.082 | tp53 | -0.035 |
| mab21l2 | 0.082 | ctnnb1 | -0.034 |
| tshz1 | 0.079 | otx1 | -0.034 |
| rbfox3a | 0.077 | CU467822.1 | -0.034 |