| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| her1 | 0.524 | actc1b | -0.255 |
| hoxb10a | 0.524 | ttn.2 | -0.228 |
| itm2cb | 0.514 | ak1 | -0.221 |
| hoxd10a | 0.503 | bhmt | -0.220 |
| her7 | 0.501 | ckma | -0.219 |
| hes6 | 0.442 | atp2a1 | -0.218 |
| BX005254.3 | 0.422 | ckmb | -0.218 |
| hoxd12a | 0.409 | fabp3 | -0.216 |
| msgn1 | 0.401 | pabpc4 | -0.216 |
| nid2a | 0.398 | aldoab | -0.214 |
| pcdh8 | 0.382 | tmem38a | -0.213 |
| her2 | 0.381 | gapdh | -0.211 |
| sall4 | 0.375 | tnnc2 | -0.206 |
| hoxb7a | 0.373 | eef1da | -0.206 |
| apoc1 | 0.372 | mylpfa | -0.204 |
| hoxa10b | 0.371 | eno1a | -0.203 |
| greb1 | 0.370 | neb | -0.202 |
| cx43.4 | 0.369 | acta1b | -0.202 |
| tbx16l | 0.367 | gamt | -0.200 |
| hoxa11b | 0.350 | si:dkey-16p21.8 | -0.200 |
| hoxd11a | 0.350 | ldb3a | -0.196 |
| ephb3 | 0.346 | tpma | -0.196 |
| rarga | 0.343 | srl | -0.195 |
| fzd10 | 0.343 | nme2b.2 | -0.194 |
| hoxa11a | 0.341 | CABZ01078594.1 | -0.193 |
| hoxc3a | 0.339 | desma | -0.193 |
| her15.1 | 0.330 | sparc | -0.193 |
| fn1b | 0.324 | cav3 | -0.192 |
| tspan7 | 0.324 | mybphb | -0.191 |
| hoxc11a | 0.320 | pvalb1 | -0.190 |
| vox | 0.316 | ldb3b | -0.190 |
| apoeb | 0.315 | pvalb2 | -0.189 |
| XLOC-003690 | 0.310 | ttn.1 | -0.189 |
| hoxd3a | 0.310 | si:ch73-367p23.2 | -0.186 |
| cdx4 | 0.306 | mylz3 | -0.186 |