| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| her4.1 | 0.650 | krt8 | -0.130 |
| her15.1 | 0.649 | krt18a.1 | -0.123 |
| XLOC-003690 | 0.577 | stm | -0.120 |
| her4.2 | 0.544 | FQ323156.1 | -0.119 |
| gdf11 | 0.523 | si:ch211-152c2.3 | -0.111 |
| hoxd10a | 0.520 | ucmab | -0.109 |
| hoxb10a | 0.515 | zmp:0000000760 | -0.107 |
| fgf20a | 0.499 | zgc:113232 | -0.106 |
| her2 | 0.469 | si:ch73-23l24.1 | -0.106 |
| her4.4 | 0.465 | epyc | -0.106 |
| XLOC-003689 | 0.440 | cmn | -0.105 |
| lrrc17 | 0.437 | col11a2 | -0.105 |
| alpi.1 | 0.427 | tbx16 | -0.102 |
| hoxd12a | 0.424 | col2a1a | -0.102 |
| pcp4a | 0.420 | matn3a | -0.101 |
| BX005254.3 | 0.418 | cnmd | -0.100 |
| XLOC-003692 | 0.398 | col9a1b | -0.100 |
| sall4 | 0.396 | s100a1 | -0.099 |
| myclb | 0.390 | atp1b3b | -0.098 |
| fgf4 | 0.389 | col9a2 | -0.097 |
| her1 | 0.373 | col11a1a | -0.097 |
| si:ch211-129o18.4 | 0.372 | agtrap | -0.096 |
| hoxd9a | 0.371 | chad | -0.096 |
| fzd10 | 0.370 | col9a3 | -0.096 |
| hoxd11a | 0.364 | si:dkey-31g6.6 | -0.095 |
| tmem134 | 0.353 | wfdc2 | -0.094 |
| fgf3 | 0.352 | shisa2a | -0.094 |
| fgf8a | 0.345 | susd5 | -0.093 |
| hoxa9a | 0.344 | chrd | -0.092 |
| ewsr1b | 0.338 | matn3b | -0.092 |
| aplnr2 | 0.336 | si:ch73-160h15.3 | -0.092 |
| parvb | 0.336 | cst3 | -0.092 |
| hoxa10b | 0.329 | gas2b | -0.091 |
| hes6 | 0.326 | wu:fb97g03 | -0.090 |
| hoxc3a | 0.323 | ddx4 | -0.090 |