| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| en2a | 0.438 | hoxb3a | -0.150 |
| cnpy1 | 0.205 | hoxc3a | -0.138 |
| en1b | 0.194 | hoxb9a | -0.138 |
| pax5 | 0.193 | hoxb8a | -0.120 |
| helt | 0.170 | hoxd3a | -0.115 |
| si:dkey-183j2.10 | 0.160 | hoxb1b | -0.111 |
| irx1a | 0.159 | hoxa3a | -0.106 |
| fabp7a | 0.159 | hoxc9a | -0.105 |
| nfia | 0.158 | hoxa9a | -0.101 |
| CR848047.1 | 0.153 | hoxb7a | -0.101 |
| efna2a | 0.151 | hoxc8a | -0.099 |
| otx1 | 0.151 | hoxd9a | -0.098 |
| sparcl1 | 0.146 | hoxa9b | -0.093 |
| ca4a | 0.145 | hoxa10b | -0.091 |
| zgc:101100 | 0.144 | hoxb10a | -0.090 |
| cxcl12a | 0.142 | hoxc6b | -0.088 |
| irx2a | 0.136 | hoxc1a | -0.086 |
| fgf8b | 0.135 | vim | -0.085 |
| otx2a | 0.129 | meis1a | -0.085 |
| en1a | 0.129 | znf503 | -0.083 |
| CU467822.1 | 0.129 | raraa | -0.081 |
| si:ch73-30b17.2 | 0.127 | gfap | -0.080 |
| CU634008.1 | 0.127 | hoxb6b | -0.078 |
| ephb3 | 0.126 | tshz1 | -0.077 |
| gpm6bb | 0.125 | hoxc4a | -0.077 |
| si:ch211-66e2.5 | 0.124 | hoxa11b | -0.076 |
| ptprz1a | 0.122 | hoxd10a | -0.076 |
| podxl | 0.121 | si:ch73-265d7.2 | -0.075 |
| slc1a3b | 0.121 | meis1b | -0.074 |
| id2a | 0.120 | si:dkeyp-110a12.4 | -0.073 |
| cspg5b | 0.120 | hoxb6a | -0.072 |
| nck1a | 0.120 | col28a2a | -0.071 |
| slc6a1b | 0.119 | robo3 | -0.070 |
| zgc:165461 | 0.118 | myt1b | -0.070 |
| slc1a2b | 0.117 | hoxc10a | -0.069 |