| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| en2a | 0.300 | foxg1b | -0.042 |
| pax5 | 0.221 | wu:fi46h04 | -0.036 |
| en1b | 0.203 | six6b | -0.030 |
| lef1 | 0.176 | anp32e | -0.030 |
| si:ch73-30b17.2 | 0.171 | pax6a | -0.030 |
| pax7a | 0.163 | cadm3 | -0.029 |
| pou3f3b | 0.154 | pax6b | -0.029 |
| tmsb | 0.154 | rorb | -0.028 |
| pou3f2a | 0.143 | hmx4 | -0.027 |
| zgc:165461 | 0.141 | six3b | -0.027 |
| cnpy1 | 0.139 | NC-002333.4 | -0.026 |
| pax7b | 0.135 | hmx1 | -0.024 |
| pou3f2b | 0.133 | mpp6b | -0.023 |
| shox | 0.131 | sox18 | -0.023 |
| elavl3 | 0.127 | fzd5 | -0.022 |
| cd99l2 | 0.125 | shisa2a | -0.022 |
| pou3f3a | 0.123 | zic2b | -0.022 |
| znf219 | 0.121 | rrs1 | -0.022 |
| emx2 | 0.117 | CABZ01005379.1 | -0.022 |
| sox14 | 0.117 | actc1b | -0.021 |
| lmo3 | 0.116 | neurod4 | -0.021 |
| nova1 | 0.112 | mybbp1a | -0.021 |
| en1a | 0.112 | rrm1 | -0.020 |
| uncx | 0.111 | si:ch211-152c2.3 | -0.020 |
| XLOC-003678 | 0.110 | XLOC-042899 | -0.020 |
| lhx1a | 0.109 | stm | -0.020 |
| st8sia2 | 0.107 | si:ch211-114n24.6 | -0.020 |
| ebf3a | 0.107 | lig1 | -0.020 |
| zfpm2b | 0.104 | XLOC-003718 | -0.019 |
| barhl1b | 0.102 | proca1 | -0.019 |
| si:ch73-386h18.1 | 0.097 | rx2 | -0.019 |
| tal2 | 0.095 | dek | -0.019 |
| atp1b4 | 0.094 | ppp1r3b | -0.018 |
| BX511161.1 | 0.094 | rrp9 | -0.018 |
| LOC101882875 | 0.093 | tmem108 | -0.018 |