| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| en2a | 0.479 | hoxb3a | -0.151 |
| cnpy1 | 0.430 | nr2f2 | -0.133 |
| pax5 | 0.430 | raraa | -0.110 |
| en1b | 0.339 | si:ch211-152c2.3 | -0.106 |
| en1a | 0.244 | stm | -0.100 |
| efna2a | 0.205 | nr2f1a | -0.100 |
| pax7a | 0.188 | fgfr3 | -0.096 |
| mdka | 0.174 | atp6v0cb | -0.094 |
| her11 | 0.165 | snap25a | -0.094 |
| her15.1 | 0.162 | map1aa | -0.094 |
| pou3f1 | 0.160 | sncb | -0.093 |
| si:ch73-30b17.2 | 0.158 | hoxd4a | -0.093 |
| ism1 | 0.154 | apoc1 | -0.092 |
| ahcy | 0.154 | hoxa3a | -0.092 |
| hmgn2 | 0.154 | hoxc4a | -0.091 |
| irx3b | 0.153 | pax6a | -0.091 |
| slf1 | 0.152 | ywhag2 | -0.090 |
| her5 | 0.151 | hoxd3a | -0.089 |
| h3f3a | 0.150 | sv2a | -0.087 |
| rplp0 | 0.150 | stxbp1a | -0.087 |
| XLOC-003692 | 0.150 | gbx1 | -0.087 |
| hnrnpa0l | 0.149 | hoxb2a | -0.087 |
| rps10 | 0.148 | NC-002333.4 | -0.086 |
| rpl22l1 | 0.146 | apoeb | -0.085 |
| abhd6a | 0.146 | crabp2b | -0.085 |
| XLOC-003689 | 0.146 | scg2b | -0.085 |
| irx1a | 0.145 | elavl4 | -0.083 |
| eef1b2 | 0.144 | foxg1a | -0.083 |
| il17rd | 0.143 | pou5f3 | -0.083 |
| rps17 | 0.143 | stmn2a | -0.082 |
| im:7152348 | 0.143 | crabp2a | -0.082 |
| rpl37 | 0.142 | nrxn1a | -0.081 |
| nme2b.1 | 0.142 | sncgb | -0.080 |
| pou3f3a | 0.142 | sypb | -0.080 |
| hmgb2b | 0.140 | eno2 | -0.080 |