| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| nkx2.4a | 0.279 | meis1b | -0.074 |
| nkx2.4b | 0.278 | hoxb3a | -0.065 |
| emx2 | 0.212 | hoxb9a | -0.061 |
| pitx2 | 0.204 | hoxc3a | -0.054 |
| barhl2 | 0.161 | hoxb8a | -0.053 |
| rspo2 | 0.150 | hoxd3a | -0.053 |
| fezf2 | 0.149 | vim | -0.052 |
| LOC110438203 | 0.135 | elavl3 | -0.050 |
| ccl44 | 0.135 | si:ch73-265d7.2 | -0.049 |
| shha | 0.133 | calm2a | -0.048 |
| wls | 0.130 | hoxb1b | -0.048 |
| id3 | 0.127 | hoxd9a | -0.048 |
| tnfrsf19 | 0.125 | tuba1c | -0.048 |
| dbx1b | 0.117 | hoxc9a | -0.046 |
| nkx2.1 | 0.116 | stmn1b | -0.046 |
| prdx1 | 0.112 | tmeff1b | -0.045 |
| sim2.1 | 0.111 | hoxa9a | -0.045 |
| barhl1a | 0.105 | hoxa3a | -0.045 |
| lmx1bb | 0.104 | hoxb7a | -0.044 |
| exoc3l1 | 0.103 | calm1a | -0.044 |
| nell2a | 0.102 | hoxc8a | -0.044 |
| emx3 | 0.101 | hoxa9b | -0.043 |
| CR753837.2 | 0.099 | tubb2b | -0.043 |
| barhl1b | 0.099 | hoxa10b | -0.042 |
| sim2 | 0.099 | hoxb10a | -0.042 |
| si:ch211-69b22.5 | 0.099 | elavl4 | -0.042 |
| epha7 | 0.095 | tuba1a | -0.041 |
| LOC101886946.1 | 0.095 | stxbp1a | -0.041 |
| slc1a3b | 0.095 | tmsb | -0.041 |
| otx2a | 0.092 | snap25a | -0.041 |
| dbx1a | 0.090 | syt2a | -0.040 |
| CU459056.1 | 0.089 | jagn1a | -0.040 |
| slc16a9a | 0.087 | hoxc6b | -0.040 |
| wnt3 | 0.087 | stx1b | -0.040 |
| fgfr3 | 0.087 | gng3 | -0.040 |