| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| hoxb6a | 0.338 | col9a1a | -0.097 |
| hoxc3a | 0.308 | col2a1a | -0.093 |
| hoxc8a | 0.269 | col9a2 | -0.089 |
| hoxb7a | 0.253 | rarga | -0.086 |
| hoxc1a | 0.247 | foxc1b | -0.081 |
| hoxb9a | 0.242 | col9a3 | -0.077 |
| hoxb6b | 0.224 | fibina | -0.077 |
| hoxb5a | 0.213 | cnmd | -0.075 |
| hoxb8b | 0.212 | fgfbp2b | -0.075 |
| hoxb1b | 0.204 | col11a2 | -0.073 |
| hoxb5b | 0.193 | col2a1b | -0.069 |
| hoxb3a | 0.192 | VIT | -0.069 |
| meis3 | 0.170 | dlx5a | -0.067 |
| hoxc6a | 0.169 | dlx3b | -0.065 |
| rdh10a | 0.151 | sox9a | -0.064 |
| BX936342.2 | 0.141 | fxyd1 | -0.064 |
| meis2b | 0.138 | six1a | -0.061 |
| hoxc9a | 0.137 | col11a1a | -0.060 |
| meis1b | 0.136 | dlx4a | -0.060 |
| hoxc6b | 0.135 | otos | -0.058 |
| CR751227.2 | 0.134 | col8a2 | -0.057 |
| meis1a | 0.134 | phlda3 | -0.056 |
| cyp27c1 | 0.131 | aldob | -0.055 |
| col7a1l | 0.130 | CYTL1 | -0.055 |
| tmem88b | 0.128 | ucmab | -0.055 |
| hoxa3a | 0.124 | dlx4b | -0.054 |
| tmem98 | 0.120 | tgfb3 | -0.054 |
| isl2b | 0.119 | adgrl2a | -0.053 |
| aldh1a2 | 0.111 | tbx15 | -0.052 |
| jam2b | 0.108 | ecrg4a | -0.051 |
| wnt2 | 0.107 | cthrc1a | -0.050 |
| hoxc4a | 0.106 | epyc | -0.049 |
| hoxc5a | 0.103 | pcbd1 | -0.049 |
| rbp5 | 0.103 | si:dkey-6n6.1 | -0.049 |
| hoxa9a | 0.102 | si:dkey-19b23.8 | -0.048 |