| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| hoxb6a | 0.398 | krtt1c19e | -0.158 |
| hoxb5a | 0.291 | col1a1b | -0.154 |
| hoxc3a | 0.282 | anxa1a | -0.149 |
| hoxb5b | 0.275 | krt5 | -0.149 |
| hoxb3a | 0.249 | si:dkey-33c14.3 | -0.149 |
| hoxb7a | 0.246 | col1a1a | -0.147 |
| hoxb9a | 0.211 | rbp4 | -0.146 |
| emx2 | 0.210 | col1a2 | -0.144 |
| hoxb1b | 0.209 | postnb | -0.142 |
| dhrs3b | 0.204 | krt91 | -0.139 |
| hoxc8a | 0.195 | s100a10b | -0.139 |
| hmx2 | 0.194 | capns1a | -0.133 |
| cdx4 | 0.191 | cotl1 | -0.132 |
| lin28a | 0.188 | eef1da | -0.129 |
| BX927258.1 | 0.188 | ak1 | -0.126 |
| XLOC-001603 | 0.180 | cxl34b.11 | -0.125 |
| zgc:162939 | 0.178 | sparc | -0.122 |
| hoxc1a | 0.176 | zgc:136930 | -0.121 |
| khdrbs1a | 0.172 | tmsb1 | -0.120 |
| tmeff1b | 0.168 | wu:fb18f06 | -0.119 |
| her12 | 0.168 | epgn | -0.119 |
| hoxb10a | 0.167 | gapdhs | -0.118 |
| vcana | 0.167 | aqp3a | -0.117 |
| BX005254.3 | 0.166 | wu:fa03e10 | -0.117 |
| apoc1 | 0.165 | itm2bb | -0.114 |
| hnrnpaba | 0.165 | lgals1l1 | -0.113 |
| snrpf | 0.164 | col2a1b | -0.113 |
| snrpb | 0.163 | aep1 | -0.113 |
| hmga1a | 0.162 | col11a1a | -0.112 |
| hmx3a | 0.162 | si:dkey-183i3.5 | -0.111 |
| snrpd2 | 0.162 | rplp2 | -0.111 |
| tpm4a | 0.161 | col14a1b | -0.110 |
| snrpe | 0.160 | col17a1a | -0.109 |
| her15.1 | 0.160 | itgb1b.2 | -0.106 |
| b3gnt7 | 0.159 | hcls1 | -0.106 |