| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| hoxb6a | 0.571 | hmgb2a | -0.047 |
| hoxb5b | 0.492 | id1 | -0.045 |
| hoxb8a | 0.470 | anp32b | -0.043 |
| hoxb5a | 0.441 | pcna | -0.042 |
| hoxb8b | 0.387 | ahcy | -0.042 |
| hoxc3a | 0.322 | tuba8l4 | -0.041 |
| hoxc1a | 0.288 | en2b | -0.041 |
| hoxc5a | 0.280 | tuba8l | -0.041 |
| hoxc6a | 0.271 | aldob | -0.040 |
| hoxb1b | 0.260 | zgc:56493 | -0.040 |
| hoxc4a | 0.238 | XLOC-003692 | -0.039 |
| hoxa3a | 0.225 | ranbp1 | -0.039 |
| hoxa5a | 0.221 | XLOC-003690 | -0.038 |
| hoxc8a | 0.210 | hmgb2b | -0.038 |
| hoxb3a | 0.191 | dut | -0.038 |
| dhrs3b | 0.179 | nutf2l | -0.037 |
| hoxb7a | 0.154 | sox2 | -0.037 |
| si:dkey-81p22.11 | 0.149 | COX7A2 (1 of many) | -0.037 |
| BX936342.2 | 0.135 | her15.1 | -0.036 |
| hoxb9a | 0.130 | eef1da | -0.036 |
| hoxd3a | 0.126 | lfng | -0.036 |
| raraa | 0.116 | mdka | -0.036 |
| skap1 | 0.111 | XLOC-003689 | -0.036 |
| CR751227.2 | 0.110 | ccnd1 | -0.036 |
| zfhx3 | 0.101 | nop10 | -0.035 |
| pik3r3b | 0.098 | msna | -0.035 |
| zfhx4 | 0.096 | ccng1 | -0.035 |
| tmie | 0.093 | ran | -0.035 |
| meis1b | 0.092 | rrm1 | -0.035 |
| tshz2 | 0.090 | si:ch211-156b7.4 | -0.035 |
| tshz1 | 0.085 | abhd6a | -0.035 |
| meis2b | 0.083 | pa2g4a | -0.034 |
| si:ch73-386h18.1 | 0.082 | tcf7l2 | -0.034 |
| rbfox3a | 0.082 | cldn5a | -0.034 |
| vim | 0.081 | boc | -0.034 |