| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| hoxb5b | 0.488 | fabp7a | -0.192 |
| hoxb6a | 0.364 | CU467822.1 | -0.169 |
| hoxb5a | 0.342 | atp1a1b | -0.165 |
| hoxc1a | 0.325 | gpm6bb | -0.144 |
| hoxc4a | 0.306 | slc1a2b | -0.144 |
| hoxb1b | 0.299 | qki2 | -0.141 |
| hoxb8a | 0.277 | ppap2d | -0.141 |
| hoxb3a | 0.268 | CR848047.1 | -0.134 |
| hoxc3a | 0.264 | cd82a | -0.133 |
| dhrs3b | 0.264 | efhd1 | -0.133 |
| hoxb8b | 0.260 | zgc:165461 | -0.131 |
| hoxc5a | 0.237 | cd63 | -0.127 |
| hoxa3a | 0.236 | ptn | -0.127 |
| raraa | 0.213 | glula | -0.124 |
| hoxa5a | 0.210 | atp1b4 | -0.120 |
| hoxc8a | 0.204 | si:ch211-66e2.5 | -0.118 |
| hoxc6b | 0.197 | slc1a3b | -0.117 |
| onecut1 | 0.187 | itm2ba | -0.113 |
| hoxc6a | 0.186 | sox9a | -0.109 |
| elavl3 | 0.185 | nfia | -0.109 |
| meis3 | 0.185 | cspg5b | -0.108 |
| chodl | 0.183 | sparc | -0.108 |
| gap43 | 0.183 | gpr37l1b | -0.108 |
| meis2b | 0.183 | CR751602.2 | -0.107 |
| gng2 | 0.178 | id1 | -0.106 |
| lin28a | 0.177 | cspg5a | -0.105 |
| tshz1 | 0.177 | cdo1 | -0.104 |
| jagn1a | 0.175 | cxcl12a | -0.104 |
| meis1b | 0.168 | fgfr2 | -0.103 |
| si:dkey-81p22.11 | 0.168 | cox4i2 | -0.102 |
| tmeff1b | 0.165 | eef1da | -0.101 |
| tubb5 | 0.164 | si:dkey-7j14.6 | -0.101 |
| myt1a | 0.163 | si:ch1073-303k11.2 | -0.100 |
| h3f3d | 0.162 | slc3a2a | -0.100 |
| nrp1a | 0.158 | cx43 | -0.099 |