| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| hoxb10a | 0.320 | col2a1a | -0.128 |
| gdf11 | 0.311 | zmp:0000000760 | -0.122 |
| hoxd10a | 0.310 | si:ch73-23l24.1 | -0.120 |
| hoxd12a | 0.281 | col11a1a | -0.119 |
| her12 | 0.266 | col9a1b | -0.118 |
| fgf20a | 0.266 | zgc:113232 | -0.117 |
| sall4 | 0.259 | FQ323156.1 | -0.115 |
| lrrc17 | 0.254 | cmn | -0.110 |
| alpi.1 | 0.243 | col9a2 | -0.107 |
| myclb | 0.237 | cnmd | -0.107 |
| hoxa9a | 0.233 | col9a3 | -0.105 |
| hoxa10b | 0.233 | tdgf1 | -0.105 |
| BX005254.3 | 0.231 | lrwd1 | -0.103 |
| hoxd13a | 0.230 | col11a2 | -0.102 |
| fzd10 | 0.229 | pou5f3 | -0.100 |
| her15.1 | 0.227 | epyc | -0.100 |
| hoxd9a | 0.223 | si:ch1073-80i24.3 | -0.098 |
| hoxc11b | 0.219 | ucmab | -0.097 |
| hoxd11a | 0.218 | col8a1a | -0.094 |
| aplnr2 | 0.213 | si:dkeyp-114g9.1 | -0.091 |
| fgf4 | 0.212 | si:dkey-228b2.6 | -0.091 |
| her4.1 | 0.211 | si:dkey-6n6.1 | -0.090 |
| mllt3 | 0.204 | si:dkey-68o6.5 | -0.090 |
| pcp4a | 0.203 | fxyd6l | -0.089 |
| hoxa11b | 0.196 | chrd | -0.088 |
| hoxc13a | 0.196 | agtrap | -0.088 |
| prdm1a | 0.195 | nnr | -0.087 |
| fgf3 | 0.193 | gpt2 | -0.087 |
| tmem134 | 0.191 | h1m | -0.086 |
| hoxc3a | 0.190 | wnt11f2 | -0.086 |
| hoxa13b | 0.189 | matn3a | -0.086 |
| nradd | 0.185 | s100a1 | -0.085 |
| XLOC-003690 | 0.184 | col2a1b | -0.085 |
| fn1a | 0.183 | vrtn | -0.085 |
| hoxb7a | 0.181 | fam169ab | -0.084 |