| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| otx1 | 0.165 | hoxb3a | -0.059 |
| or128-8 | 0.109 | meis1b | -0.057 |
| LOC101884052 | 0.105 | hoxc3a | -0.055 |
| otx2a | 0.104 | hoxb9a | -0.049 |
| helt | 0.098 | hoxb1b | -0.046 |
| zgc:101100 | 0.090 | hoxd3a | -0.045 |
| tmc4 | 0.075 | hoxb8a | -0.044 |
| slc1a3b | 0.075 | hoxc9a | -0.042 |
| ptn | 0.073 | hoxa3a | -0.041 |
| ca4a | 0.071 | hoxa9a | -0.040 |
| LOC103909901 | 0.071 | hoxd9a | -0.039 |
| CR628410.1 | 0.071 | ptmaa | -0.039 |
| SLC15A5 | 0.070 | hoxb10a | -0.038 |
| en2b | 0.070 | hoxb7a | -0.037 |
| si:ch211-66e2.5 | 0.069 | hoxa10b | -0.037 |
| BX640512.3 | 0.068 | hoxc1a | -0.036 |
| mespaa | 0.066 | hoxc8a | -0.035 |
| slc2a11l | 0.066 | meis2b | -0.035 |
| cspg5b | 0.065 | hoxa9b | -0.035 |
| podxl | 0.064 | si:ch73-265d7.2 | -0.034 |
| otx2b | 0.063 | hoxc6b | -0.033 |
| si:dkey-42l23.2 | 0.062 | meis1a | -0.032 |
| fabp7a | 0.060 | ptmab | -0.032 |
| LOC110438250 | 0.060 | elavl3 | -0.031 |
| zgc:165461 | 0.060 | hoxb6b | -0.031 |
| sfxn5b | 0.060 | cx43.4 | -0.031 |
| slc1a2b | 0.060 | hoxa11b | -0.030 |
| mfge8a | 0.060 | gbx1 | -0.030 |
| CU550713.1 | 0.059 | hoxd10a | -0.030 |
| si:dkey-85k7.7 | 0.058 | tshz1 | -0.030 |
| marcksl1a | 0.057 | myt1b | -0.030 |
| fgfr2 | 0.057 | h3f3d | -0.029 |
| LOC103909284 | 0.057 | gfap | -0.029 |
| sema3fa | 0.057 | hoxc4a | -0.029 |
| ppap2d | 0.056 | cdkn1ca | -0.028 |