| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| en2b | 0.438 | hoxb3a | -0.095 |
| sparcl1 | 0.231 | hoxb9a | -0.087 |
| cnpy1 | 0.213 | hoxc3a | -0.086 |
| en1b | 0.207 | hoxb8a | -0.078 |
| pax5 | 0.197 | hoxb1b | -0.072 |
| fgf8b | 0.158 | hoxc9a | -0.070 |
| slf1 | 0.153 | si:ch211-222l21.1 | -0.069 |
| shhb | 0.148 | ptmab | -0.069 |
| spon1b | 0.143 | hoxa3a | -0.068 |
| wif1 | 0.141 | hoxd3a | -0.067 |
| ca4a | 0.136 | hoxb7a | -0.063 |
| slc1a3b | 0.135 | h3f3d | -0.063 |
| cxcl12b | 0.130 | hoxa9a | -0.061 |
| ntn1b | 0.129 | hoxc8a | -0.061 |
| cpm | 0.127 | hoxd9a | -0.058 |
| si:ch211-66e2.5 | 0.121 | hoxc1a | -0.058 |
| ptn | 0.120 | gfap | -0.058 |
| fabp7a | 0.118 | hoxa9b | -0.056 |
| nck1a | 0.116 | hsp90ab1 | -0.055 |
| ptprz1b | 0.115 | hmga1a | -0.055 |
| cspg5b | 0.112 | meis1a | -0.055 |
| efna5a | 0.111 | hoxb10a | -0.054 |
| si:dkey-208c12.2 | 0.110 | hoxc6b | -0.054 |
| cxcl12a | 0.107 | hnrnpaba | -0.054 |
| slit2 | 0.106 | hoxa10b | -0.052 |
| slc6a1b | 0.106 | col28a2a | -0.052 |
| si:dkey-183j2.10 | 0.106 | h3f3a | -0.050 |
| cd81b | 0.105 | cx43.4 | -0.049 |
| fgf4 | 0.104 | cdkn1ca | -0.049 |
| sulf1 | 0.101 | tshz1 | -0.049 |
| mfge8a | 0.101 | tubb2b | -0.049 |
| lrp8 | 0.099 | hoxc4a | -0.048 |
| id2a | 0.098 | ptmaa | -0.048 |
| en1a | 0.097 | hoxb6b | -0.048 |
| spry2 | 0.096 | elavl3 | -0.047 |