| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| en2b | 0.300 | pax6a | -0.026 |
| pax5 | 0.178 | foxg1b | -0.026 |
| en1b | 0.165 | wu:fi46h04 | -0.024 |
| si:ch73-30b17.2 | 0.128 | pax6b | -0.023 |
| pou3f3b | 0.119 | fzd5 | -0.022 |
| lef1 | 0.119 | cadm3 | -0.022 |
| pax7a | 0.118 | hmx4 | -0.021 |
| cnpy1 | 0.116 | rorb | -0.021 |
| en1a | 0.110 | CABZ01005379.1 | -0.019 |
| zgc:165461 | 0.105 | sox18 | -0.019 |
| pou3f2a | 0.105 | rrm1 | -0.018 |
| atp1b4 | 0.103 | hes2.2 | -0.018 |
| pou3f2b | 0.100 | XLOC-042899 | -0.017 |
| pou3f3a | 0.099 | vsx2 | -0.017 |
| nova1 | 0.094 | hmx1 | -0.017 |
| tmsb | 0.091 | LOC108180269 | -0.017 |
| pax7b | 0.091 | anp32e | -0.016 |
| fgf8b | 0.090 | chtf8 | -0.016 |
| slf1 | 0.086 | si:dkey-238o13.4 | -0.016 |
| cd99l2 | 0.085 | si:ch211-129p13.1 | -0.015 |
| emx2 | 0.084 | si:ch211-114n24.6 | -0.015 |
| tal1 | 0.084 | mpp6b | -0.015 |
| elavl3 | 0.082 | pvalb2 | -0.015 |
| znf219 | 0.081 | crip3 | -0.014 |
| st8sia2 | 0.080 | lig1 | -0.014 |
| LOC101882875 | 0.078 | six6b | -0.014 |
| XLOC-003678 | 0.078 | fen1 | -0.014 |
| lmo3 | 0.078 | foxd1 | -0.014 |
| gata3 | 0.076 | rx2 | -0.014 |
| tal2 | 0.076 | cks1b | -0.014 |
| ntn1b | 0.073 | hes2.1 | -0.014 |
| sox14 | 0.073 | rrs1 | -0.014 |
| atoh1b | 0.072 | si:ch1073-228h2.2 | -0.014 |
| uncx | 0.071 | cenph | -0.014 |
| adra1ab | 0.070 | six3b | -0.014 |