| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| hoxb10a | 0.440 | krt91 | -0.158 |
| cdx4 | 0.436 | gapdhs | -0.152 |
| hoxb7a | 0.403 | krtt1c19e | -0.145 |
| hoxb9a | 0.400 | capns1a | -0.143 |
| BX005254.3 | 0.392 | anxa1a | -0.141 |
| emx2 | 0.387 | aqp3a | -0.135 |
| hoxd10a | 0.368 | rplp2 | -0.135 |
| hoxd12a | 0.363 | rbp4 | -0.133 |
| hoxa10b | 0.354 | si:dkey-33c14.3 | -0.132 |
| crabp2a | 0.348 | anxa2a | -0.128 |
| apela | 0.340 | eef1da | -0.127 |
| hoxc3a | 0.336 | cotl1 | -0.126 |
| b3gnt7 | 0.335 | ptmaa | -0.125 |
| hoxd11a | 0.318 | capgb | -0.123 |
| prickle1a | 0.314 | col1a1b | -0.122 |
| vcana | 0.311 | si:ch211-39i22.1 | -0.120 |
| hoxc11b | 0.310 | cxl34b.11 | -0.119 |
| hoxc6b | 0.309 | sparc | -0.117 |
| hoxc8a | 0.307 | ak1 | -0.117 |
| emx3 | 0.305 | ahcy | -0.116 |
| hoxd9a | 0.304 | col14a1b | -0.116 |
| hoxa11b | 0.302 | col1a1a | -0.115 |
| mllt3 | 0.301 | epgn | -0.112 |
| hoxa9a | 0.300 | pycard | -0.109 |
| ccdc3a | 0.284 | zgc:136930 | -0.109 |
| BX001014.2 | 0.283 | krt5 | -0.107 |
| hoxd3a | 0.282 | pvalb1 | -0.107 |
| hoxa9b | 0.279 | aep1 | -0.105 |
| LOC101882251 | 0.276 | lgals1l1 | -0.103 |
| nkx1.2la | 0.273 | igfbp7 | -0.103 |
| insl5a | 0.271 | wu:fa03e10 | -0.103 |
| sp8b | 0.265 | s100v1 | -0.102 |
| fibinb | 0.264 | pvalb2 | -0.102 |
| tpm4a | 0.262 | si:dkey-183i3.5 | -0.100 |
| sp5l | 0.256 | col1a2 | -0.100 |