| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| BX005254.3 | 0.433 | krt8 | -0.155 |
| si:ch211-129o18.4 | 0.409 | si:ch73-23l24.1 | -0.150 |
| hoxc3a | 0.405 | zgc:113232 | -0.146 |
| fgf20a | 0.402 | zmp:0000000760 | -0.137 |
| hoxb7a | 0.383 | col9a2 | -0.136 |
| hoxd9a | 0.379 | epyc | -0.136 |
| gdf11 | 0.373 | col11a2 | -0.134 |
| aplnr2 | 0.364 | col9a1b | -0.134 |
| cdx4 | 0.347 | cmn | -0.132 |
| hoxa9a | 0.346 | col2a1a | -0.130 |
| sst6 | 0.341 | krt18a.1 | -0.128 |
| hoxb10a | 0.338 | cnmd | -0.126 |
| tcf15 | 0.331 | ucmab | -0.125 |
| fgf4 | 0.330 | col11a1a | -0.123 |
| hoxd10a | 0.328 | matn3a | -0.119 |
| alpi.1 | 0.328 | marcksl1b | -0.118 |
| nradd | 0.324 | col9a3 | -0.114 |
| hoxc8a | 0.322 | ehd2b | -0.112 |
| fzd10 | 0.307 | snorc | -0.112 |
| sall4 | 0.305 | matn3b | -0.110 |
| cdaa | 0.304 | fxyd6l | -0.110 |
| hoxb9a | 0.304 | krt5 | -0.110 |
| wnt2bb | 0.300 | FQ323156.1 | -0.108 |
| si:ch211-27e6.1 | 0.296 | chad | -0.108 |
| emid1 | 0.290 | wfdc2 | -0.106 |
| her12 | 0.285 | gas2b | -0.105 |
| fgf8a | 0.283 | si:dkey-31g6.6 | -0.105 |
| hoxc6b | 0.282 | cav2 | -0.104 |
| fam49al | 0.276 | ctgfa | -0.103 |
| wnt5b | 0.271 | rgcc | -0.102 |
| hoxa9b | 0.260 | tgfb3 | -0.102 |
| fgf3 | 0.253 | susd5 | -0.102 |
| hes6 | 0.253 | mmp23bb | -0.102 |
| parvb | 0.253 | sparc | -0.101 |
| fn1a | 0.245 | nid1a | -0.101 |