| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| cdx4 | 0.252 | CR383676.1 | -0.102 |
| hoxb7a | 0.250 | ptmaa | -0.079 |
| BX005254.3 | 0.221 | marcksl1a | -0.077 |
| hoxa9a | 0.171 | rpl37 | -0.073 |
| hoxc8a | 0.156 | gpm6aa | -0.070 |
| hoxc6b | 0.154 | COX3 | -0.069 |
| hoxc3a | 0.148 | rps10 | -0.068 |
| hspb1 | 0.140 | rtn1a | -0.067 |
| hoxb9a | 0.137 | tuba1c | -0.066 |
| hoxd9a | 0.134 | zgc:114188 | -0.065 |
| nradd | 0.122 | mt-co2 | -0.063 |
| hoxa9b | 0.121 | h3f3a | -0.062 |
| chrd | 0.119 | celf2 | -0.062 |
| ptgdsb.1 | 0.109 | nova2 | -0.062 |
| ptgdsb.2 | 0.106 | ckbb | -0.061 |
| cdx1a | 0.105 | zgc:158463 | -0.060 |
| hoxc9a | 0.103 | fabp3 | -0.059 |
| hoxb1b | 0.103 | stmn1b | -0.058 |
| nkx1.2la | 0.102 | marcksl1b | -0.057 |
| hoxb10a | 0.102 | elavl3 | -0.056 |
| gig2g | 0.101 | tmsb4x | -0.056 |
| BX927258.1 | 0.101 | tmsb | -0.055 |
| npm1a | 0.097 | ppiab | -0.053 |
| wu:fb97g03 | 0.094 | mt-co1 | -0.052 |
| ldlrad2 | 0.092 | ppdpfb | -0.051 |
| apoc1 | 0.087 | ccni | -0.051 |
| LOC110438394 | 0.086 | pvalb1 | -0.051 |
| oc90 | 0.086 | pvalb2 | -0.050 |
| nop58 | 0.083 | h3f3c | -0.050 |
| hoxa11b | 0.082 | gpm6ab | -0.050 |
| dkc1 | 0.081 | mt-atp6 | -0.050 |
| hoxa10b | 0.080 | tubb5 | -0.050 |
| fbl | 0.080 | actc1b | -0.049 |
| COX7A2 | 0.079 | gapdhs | -0.049 |
| ebna1bp2 | 0.078 | hbbe1.3 | -0.048 |