| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| kazald2 | 0.241 | col2a1a | -0.116 |
| lin28a | 0.192 | col9a2 | -0.115 |
| hoxc11a | 0.165 | cnmd | -0.115 |
| CABZ01075068.1 | 0.152 | col9a1a | -0.112 |
| hoxc11b | 0.151 | col9a3 | -0.112 |
| si:dkey-195m11.8 | 0.150 | fgfbp2b | -0.099 |
| hmga1a | 0.147 | ecrg4a | -0.095 |
| sall4 | 0.146 | col11a2 | -0.095 |
| hoxd10a | 0.144 | rbp4 | -0.089 |
| hoxd12a | 0.140 | foxc1b | -0.088 |
| vox | 0.140 | sparc | -0.083 |
| zbtb16a | 0.138 | zgc:162730 | -0.082 |
| hoxd9a | 0.138 | fxyd1 | -0.082 |
| hmgb2a | 0.137 | eef1da | -0.080 |
| zgc:56699 | 0.136 | col2a1b | -0.078 |
| hoxb10a | 0.135 | VIT | -0.075 |
| XLOC-001964 | 0.134 | wfdc2 | -0.074 |
| hoxc12b | 0.133 | ucmab | -0.073 |
| dhrs3b | 0.132 | epyc | -0.073 |
| thy1 | 0.131 | otos | -0.073 |
| si:ch211-222l21.1 | 0.129 | sox9a | -0.072 |
| cx43.4 | 0.128 | col8a2 | -0.072 |
| hoxb1b | 0.128 | pvalb1 | -0.072 |
| tmem88b | 0.127 | CABZ01092746.1 | -0.072 |
| hoxd11a | 0.127 | socs3a | -0.071 |
| meis3 | 0.126 | apoa2 | -0.071 |
| hoxa11a | 0.126 | slc3a2b | -0.071 |
| hoxb9a | 0.125 | ier2b | -0.069 |
| hoxa11b | 0.125 | matn1 | -0.069 |
| hoxc10a | 0.124 | mdkb | -0.069 |
| snrpb | 0.123 | nfia | -0.069 |
| khdrbs1a | 0.123 | ppdpfb | -0.068 |
| nrip1b | 0.120 | angptl1a | -0.068 |
| abracl | 0.118 | b2ml | -0.067 |
| nr2f5 | 0.116 | ckbb | -0.067 |