| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| hoxb10a | 0.346 | epyc | -0.123 |
| gdf11 | 0.332 | ucmab | -0.115 |
| hoxd10a | 0.318 | col2a1a | -0.115 |
| fgf20a | 0.306 | zgc:113232 | -0.114 |
| fgf4 | 0.299 | si:ch73-23l24.1 | -0.114 |
| hoxd12a | 0.292 | matn3a | -0.113 |
| fgf8a | 0.291 | col9a1b | -0.113 |
| nradd | 0.284 | col11a2 | -0.112 |
| hes6 | 0.282 | zmp:0000000760 | -0.110 |
| cdx4 | 0.281 | col11a1a | -0.106 |
| BX005254.3 | 0.278 | krt5 | -0.105 |
| alpi.1 | 0.273 | col9a3 | -0.105 |
| wnt5b | 0.272 | chad | -0.103 |
| htr5aa | 0.271 | si:dkey-31g6.6 | -0.103 |
| sall4 | 0.270 | col9a2 | -0.103 |
| her1 | 0.268 | matn3b | -0.102 |
| her12 | 0.267 | krt8 | -0.099 |
| dand5 | 0.262 | mmp23bb | -0.099 |
| sst6 | 0.260 | cnmd | -0.099 |
| pcp4a | 0.258 | nid1a | -0.096 |
| si:ch211-129o18.4 | 0.256 | cmn | -0.096 |
| fam49al | 0.248 | wfdc2 | -0.095 |
| hoxb7a | 0.248 | rgcc | -0.094 |
| itm2cb | 0.247 | fgfr3 | -0.094 |
| fgf3 | 0.246 | sparc | -0.093 |
| hoxd11a | 0.244 | snorc | -0.093 |
| lrrc17 | 0.238 | krt18a.1 | -0.093 |
| fzd10 | 0.236 | igsf10 | -0.091 |
| hoxa13b | 0.234 | susd5 | -0.090 |
| hoxc3a | 0.230 | atp1b3b | -0.090 |
| hoxc13a | 0.221 | si:dkey-6n6.1 | -0.089 |
| her7 | 0.221 | si:dkey-234i14.3 | -0.089 |
| hoxd13a | 0.219 | gas2b | -0.089 |
| hoxd9a | 0.219 | fam198a | -0.088 |
| emid1 | 0.218 | tppp3 | -0.088 |