| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| six6b | 0.412 | ptmab | -0.057 |
| six3b | 0.308 | hoxb9a | -0.047 |
| vax2 | 0.305 | hoxc3a | -0.045 |
| six3a | 0.287 | hoxb3a | -0.044 |
| vax1 | 0.256 | hmga1a | -0.042 |
| fzd5 | 0.251 | h3f3d | -0.041 |
| slc16a9a | 0.227 | elavl3 | -0.039 |
| eno4 | 0.220 | hoxd3a | -0.039 |
| CABZ01030107.1 | 0.203 | meis1b | -0.038 |
| olfml2bb | 0.171 | hmgb3a | -0.038 |
| nkx2.1 | 0.167 | cdkn1ca | -0.038 |
| fgf8b | 0.147 | hoxb8a | -0.038 |
| adamts18 | 0.140 | tmeff1b | -0.037 |
| nkx2.4b | 0.140 | h3f3a | -0.037 |
| si:ch211-160j14.3 | 0.138 | hoxa9a | -0.037 |
| shhb | 0.125 | myt1b | -0.036 |
| ntrk2a | 0.119 | ptmaa | -0.036 |
| nog2 | 0.114 | hoxd9a | -0.036 |
| efna5b | 0.111 | hoxc9a | -0.036 |
| LOC108191313 | 0.107 | tubb2b | -0.036 |
| si:ch211-1o7.3 | 0.106 | znf503 | -0.036 |
| cyp1b1 | 0.105 | hsp90ab1 | -0.035 |
| nck1a | 0.104 | chd4a | -0.034 |
| ppap2d | 0.102 | nr2f1a | -0.034 |
| ccka | 0.099 | cirbpa | -0.034 |
| fezf1 | 0.097 | si:ch73-386h18.1 | -0.033 |
| sox1b | 0.097 | hoxb1b | -0.033 |
| nkx2.4a | 0.096 | hoxb7a | -0.033 |
| cfd | 0.096 | hoxa9b | -0.033 |
| fgf3 | 0.095 | ube2e3 | -0.032 |
| zgc:174888 | 0.094 | si:ch211-57n23.4 | -0.032 |
| ism1 | 0.094 | hmgn6 | -0.032 |
| scube1 | 0.092 | hoxc8a | -0.032 |
| slc1a3b | 0.092 | nfyba | -0.032 |
| FO904870.1 | 0.091 | myt1a | -0.031 |