| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| sim2 | 0.402 | meis1b | -0.065 |
| unc119.2 | 0.233 | hoxb3a | -0.054 |
| mtnr1aa | 0.157 | hoxb9a | -0.046 |
| otx2a | 0.157 | hoxc3a | -0.046 |
| pitx2 | 0.131 | hoxb8a | -0.041 |
| cdh5 | 0.131 | si:ch73-265d7.2 | -0.040 |
| CU929037.3 | 0.123 | hoxd3a | -0.039 |
| lmo1 | 0.121 | hoxc9a | -0.037 |
| nkx2.4a | 0.112 | hoxb1b | -0.037 |
| wnt8b | 0.111 | hoxa3a | -0.035 |
| barhl1a | 0.105 | gas1b | -0.035 |
| pcdh9 | 0.105 | hoxa9a | -0.035 |
| CT737227.1 | 0.104 | si:ch211-251b21.1 | -0.035 |
| nkx2.4b | 0.103 | hoxb7a | -0.034 |
| barhl2 | 0.103 | sp8b | -0.033 |
| phox2a | 0.097 | hoxd9a | -0.033 |
| otx1 | 0.091 | hoxc8a | -0.032 |
| shisal1a | 0.090 | pax3a | -0.032 |
| isl2a | 0.088 | hoxa9b | -0.031 |
| sim1a | 0.088 | hoxb10a | -0.030 |
| prph | 0.086 | hoxa10b | -0.030 |
| pou6f2 | 0.085 | hoxc6b | -0.030 |
| dbx1a | 0.083 | raraa | -0.030 |
| dbx1b | 0.083 | atp1a1b | -0.030 |
| CR848717.1 | 0.082 | mdkb | -0.030 |
| CABZ01067973.1 | 0.081 | meis1a | -0.030 |
| shha | 0.078 | vim | -0.029 |
| CR812832.1 | 0.078 | nr2f6b | -0.029 |
| XLOC-004681 | 0.077 | hoxc4a | -0.029 |
| si:ch73-170d6.3 | 0.076 | slc1a3a | -0.028 |
| XLOC-035513 | 0.075 | hoxc1a | -0.028 |
| ptprn2 | 0.074 | meis2a | -0.027 |
| phox2bb | 0.074 | hoxd10a | -0.027 |
| CABZ01080074.1 | 0.073 | pax6b | -0.027 |
| eya1 | 0.072 | spry2 | -0.027 |