| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| hoxc4a | 0.342 | en2b | -0.110 |
| hoxd4a | 0.294 | tcf7l2 | -0.073 |
| hoxb3a | 0.282 | en2a | -0.068 |
| hoxb5b | 0.229 | sox1b | -0.064 |
| hoxc1a | 0.224 | foxg1a | -0.064 |
| hoxb5a | 0.191 | otx2a | -0.064 |
| hoxd3a | 0.185 | islr2 | -0.064 |
| hoxa3a | 0.181 | cnpy1 | -0.061 |
| rxrga | 0.180 | otx1 | -0.056 |
| hoxc3a | 0.172 | nkx2.4b | -0.056 |
| meis2b | 0.171 | fezf2 | -0.055 |
| meis1b | 0.158 | six3b | -0.054 |
| hoxa5a | 0.149 | pax5 | -0.053 |
| meis3 | 0.148 | nkx2.1 | -0.051 |
| gbx1 | 0.143 | nkx2.4a | -0.050 |
| znf503 | 0.142 | ptprn2 | -0.049 |
| hoxc5a | 0.141 | six3a | -0.048 |
| hoxb1b | 0.136 | xpr1a | -0.048 |
| tshz1 | 0.129 | lhx2b | -0.048 |
| mab21l2 | 0.126 | nr2e1 | -0.047 |
| crabp2a | 0.124 | arxa | -0.047 |
| phox2bb | 0.124 | dlx5a | -0.047 |
| CR751227.2 | 0.120 | emx2 | -0.046 |
| crabp1b | 0.119 | fezf1 | -0.046 |
| hoxb6b | 0.116 | sfrp5 | -0.045 |
| hoxb2a | 0.112 | dlx2a | -0.044 |
| si:ch73-386h18.1 | 0.112 | otx2b | -0.044 |
| wnt11r | 0.110 | dlx1a | -0.044 |
| dhrs3b | 0.110 | im:7152348 | -0.044 |
| hoxb6a | 0.109 | zgc:101100 | -0.044 |
| slc1a3a | 0.108 | sox5 | -0.043 |
| nr2f6b | 0.099 | insm1b | -0.043 |
| lmx1bb | 0.097 | CR751602.2 | -0.043 |
| znf703 | 0.096 | lef1 | -0.042 |
| zgc:112332 | 0.095 | ek1 | -0.042 |