| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| hoxb10a | 0.247 | fkbp11 | -0.079 |
| aplnr2 | 0.216 | FQ323119.1 | -0.070 |
| fgf8a | 0.208 | tbx3a | -0.069 |
| BX005254.2 | 0.207 | emilin3a | -0.067 |
| nradd | 0.206 | loxl5b | -0.067 |
| hoxa9a | 0.202 | sec22ba | -0.067 |
| hoxd10a | 0.199 | sntb2 | -0.066 |
| wnt2bb | 0.198 | si:dkey-26g8.4 | -0.066 |
| her12 | 0.197 | hdlbpa | -0.066 |
| si:dkey-40c11.2 | 0.196 | he1.1 | -0.064 |
| hoxd12a | 0.186 | wu:fa26c03 | -0.064 |
| sox2 | 0.185 | zgc:92380 | -0.064 |
| hoxa10b | 0.184 | lman1 | -0.064 |
| XLOC-042222 | 0.184 | hjv | -0.063 |
| hes6 | 0.183 | si:dkey-269i1.3 | -0.063 |
| itm2cb | 0.180 | si:dkey-239j18.3 | -0.062 |
| hoxd11a | 0.180 | si:dkey-269i1.4 | -0.062 |
| BX005254.3 | 0.179 | ca8 | -0.062 |
| pcdh19 | 0.179 | col5a3a | -0.062 |
| BX001014.2 | 0.179 | si:dkey-12l12.1 | -0.061 |
| hoxa9b | 0.178 | ctslb | -0.061 |
| cdaa | 0.177 | si:dkey-26g8.5 | -0.061 |
| gdf11 | 0.176 | irx3b | -0.061 |
| XLOC-003690 | 0.174 | si:dkey-239j18.2 | -0.060 |
| cdx4 | 0.173 | he1.2 | -0.060 |
| foxb1b | 0.168 | pitx2 | -0.060 |
| rab36 | 0.167 | hpcal1 | -0.059 |
| wnt5b | 0.166 | tram1 | -0.059 |
| cfap45 | 0.166 | col8a1a | -0.059 |
| lrrc17 | 0.164 | pmm2 | -0.059 |
| hoxc3a | 0.163 | jcada | -0.058 |
| hoxd9a | 0.162 | papss2b | -0.058 |
| hoxc6b | 0.161 | zgc:174153 | -0.058 |
| hoxb7a | 0.161 | copz2 | -0.058 |
| hoxa11b | 0.160 | caskin1 | -0.058 |