| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| zgc:101100 | 0.251 | hoxb3a | -0.118 |
| helt | 0.239 | hoxc3a | -0.107 |
| CR936482.1 | 0.203 | hoxb9a | -0.101 |
| otx2a | 0.191 | meis1b | -0.094 |
| LOC103909284 | 0.141 | vim | -0.092 |
| hs3st1l2 | 0.139 | hoxb8a | -0.090 |
| otx1 | 0.138 | hoxb1b | -0.087 |
| CR848047.1 | 0.132 | si:ch73-265d7.2 | -0.085 |
| fabp7a | 0.129 | hoxd3a | -0.083 |
| podxl | 0.126 | hoxc9a | -0.080 |
| rbp5 | 0.123 | hoxb7a | -0.077 |
| zgc:165461 | 0.119 | hoxc8a | -0.077 |
| nfia | 0.118 | hoxa3a | -0.076 |
| CR751602.2 | 0.114 | hoxb10a | -0.072 |
| CU467822.1 | 0.112 | hoxc6b | -0.072 |
| nr2e1 | 0.111 | hoxd9a | -0.071 |
| irx1a | 0.109 | hoxa9a | -0.071 |
| si:ch211-69b22.5 | 0.108 | hoxc1a | -0.069 |
| marcksl1a | 0.107 | meis1a | -0.068 |
| crabp1a | 0.105 | slc1a3a | -0.068 |
| tcf7l2 | 0.104 | hoxa9b | -0.067 |
| fgfr2 | 0.104 | meis2b | -0.065 |
| CU634008.1 | 0.102 | hoxa10b | -0.064 |
| slc1a2b | 0.102 | col28a2a | -0.063 |
| mbd3b | 0.098 | ube2e3 | -0.060 |
| ephb3a | 0.098 | si:dkeyp-110a12.4 | -0.059 |
| en2b | 0.098 | si:ch73-386h18.1 | -0.059 |
| her6 | 0.096 | hoxb6b | -0.058 |
| irx2a | 0.096 | elavl3 | -0.057 |
| pcp4l1 | 0.094 | cdx4 | -0.057 |
| mir181b-3 | 0.093 | serinc5 | -0.057 |
| si:ch73-30b17.2 | 0.092 | sp8a | -0.057 |
| chfr | 0.091 | hoxa11b | -0.056 |
| rorb | 0.090 | syt2a | -0.056 |
| si:ch211-284e13.6 | 0.089 | hoxd10a | -0.056 |