| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| nkx2.4b | 0.299 | meis1b | -0.070 |
| foxg1a | 0.256 | hoxb3a | -0.066 |
| nkx2.4a | 0.217 | hoxc3a | -0.059 |
| CABZ01030107.1 | 0.187 | hoxb9a | -0.059 |
| six3a | 0.185 | hoxb8a | -0.053 |
| slc16a9a | 0.181 | si:ch73-265d7.2 | -0.051 |
| six6a | 0.167 | hoxb1b | -0.050 |
| id3 | 0.165 | hoxd3a | -0.050 |
| ccka | 0.158 | gfap | -0.049 |
| LOC108191313 | 0.156 | hoxc9a | -0.049 |
| sfrp5 | 0.143 | hoxa3a | -0.046 |
| LOC110438203 | 0.137 | sb:cb81 | -0.046 |
| six3b | 0.131 | hoxa9a | -0.045 |
| ccl44 | 0.130 | hoxc8a | -0.043 |
| fezf2 | 0.129 | hoxd9a | -0.043 |
| slc1a3b | 0.125 | slc1a3a | -0.042 |
| si:ch211-243a20.3 | 0.120 | pax3a | -0.042 |
| sox1b | 0.117 | hoxb7a | -0.040 |
| wnt8b | 0.116 | hoxa10b | -0.040 |
| fzd5 | 0.113 | hoxb10a | -0.040 |
| emx2 | 0.111 | tmeff1b | -0.040 |
| ntrk2a | 0.108 | znf503 | -0.040 |
| nrp2b | 0.107 | meis2a | -0.039 |
| sox1a | 0.104 | wnt11r | -0.039 |
| zgc:165461 | 0.102 | hoxc6b | -0.038 |
| cald1a | 0.097 | hoxa9b | -0.038 |
| lhx2b | 0.094 | hoxc1a | -0.037 |
| vax1 | 0.092 | tshz1 | -0.037 |
| lrig1 | 0.092 | tuba1a | -0.037 |
| marcksl1a | 0.091 | col28a2a | -0.037 |
| six6b | 0.090 | raraa | -0.037 |
| bsx | 0.089 | ptmaa | -0.036 |
| fezf1 | 0.088 | ube2e3 | -0.036 |
| itgbl1 | 0.088 | zfhx3 | -0.036 |
| fgfrl1a | 0.087 | irx3b | -0.036 |