| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r | 
| nkx2.4b | 0.332 | rps10 | -0.031 | 
| lft1 | 0.264 | rpl37 | -0.031 | 
| nkx2.4a | 0.250 | rorb | -0.029 | 
| nkx2.9 | 0.192 | cadm3 | -0.028 | 
| ndr2 | 0.184 | zgc:114188 | -0.026 | 
| lft2 | 0.178 | pax6a | -0.023 | 
| nkx2.2b | 0.153 | h3f3a | -0.023 | 
| dlx2a | 0.146 | pax6b | -0.021 | 
| gsc | 0.140 | rps17 | -0.021 | 
| LOC110438203 | 0.129 | NC-002333.17 | -0.019 | 
| dlx5a | 0.125 | hnrnpa0l | -0.018 | 
| dbx1a | 0.124 | ahcy | -0.018 | 
| lhx6 | 0.120 | si:ch1073-429i10.3.1 | -0.018 | 
| dlx1a | 0.120 | ppiab | -0.018 | 
| dlx6a | 0.115 | mpp6b | -0.017 | 
| nts | 0.112 | vsx2 | -0.017 | 
| foxa | 0.107 | atp5mc3b | -0.017 | 
| dlx2b | 0.107 | COX3 | -0.017 | 
| arxa | 0.106 | neurod4 | -0.017 | 
| sox19a | 0.104 | zgc:158463 | -0.016 | 
| foxb1b | 0.103 | foxg1b | -0.016 | 
| dact2 | 0.102 | LOC110439372 | -0.016 | 
| zgc:165461 | 0.095 | zgc:153409 | -0.015 | 
| foxd5 | 0.094 | actc1b | -0.015 | 
| si:dkey-61p9.7 | 0.094 | gpm6ab | -0.015 | 
| lhx8b | 0.093 | hmx1 | -0.015 | 
| LOC108191313 | 0.093 | mt-atp6 | -0.015 | 
| sox1b | 0.092 | krt4 | -0.015 | 
| CR847803.1 | 0.088 | hes2.2 | -0.015 | 
| LOC101883163 | 0.088 | LOC798783 | -0.015 | 
| fgf3 | 0.087 | hmx4 | -0.014 | 
| nkx1.2la | 0.086 | hbbe1.3 | -0.014 | 
| CR847971.1 | 0.086 | bambia | -0.014 | 
| LOC101882159 | 0.086 | znf516 | -0.014 | 
| crha | 0.084 | si:dkey-238o13.4 | -0.014 |