| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| emx3 | 0.347 | marcksl1b | -0.121 |
| lhx2b | 0.296 | hoxb3a | -0.114 |
| fezf1 | 0.279 | meis1b | -0.106 |
| fezf2 | 0.260 | hoxb9a | -0.104 |
| fgf22 | 0.258 | hoxc3a | -0.102 |
| nkx2.1 | 0.256 | hoxb8a | -0.092 |
| grm2b | 0.225 | cdkn1ca | -0.091 |
| slc1a3b | 0.224 | si:ch73-265d7.2 | -0.090 |
| hs3st1l2 | 0.223 | si:ch73-386h18.1 | -0.089 |
| zgc:165461 | 0.216 | elavl3 | -0.086 |
| ntrk2a | 0.215 | hoxb1b | -0.083 |
| wnt7ba | 0.209 | hoxd3a | -0.082 |
| efnb2a | 0.198 | sb:cb81 | -0.082 |
| LOC103909284 | 0.185 | hoxc9a | -0.080 |
| cspg5b | 0.184 | zc4h2 | -0.080 |
| sfrp5 | 0.184 | tubb5 | -0.079 |
| znf296 | 0.182 | h3f3d | -0.078 |
| efnb1 | 0.182 | nr2f6b | -0.078 |
| lix1 | 0.170 | ldlrad2 | -0.077 |
| CU467822.1 | 0.170 | myt1b | -0.077 |
| fabp7a | 0.168 | hoxb7a | -0.077 |
| lrig1 | 0.165 | hoxa3a | -0.076 |
| slc1a2b | 0.163 | si:ch211-57n23.4 | -0.075 |
| fgfrl1a | 0.158 | hoxa9a | -0.075 |
| nfixb | 0.156 | zgc:100920 | -0.075 |
| si:ch211-156b7.4 | 0.154 | tmeff1b | -0.074 |
| ppap2d | 0.154 | gfap | -0.074 |
| fam69c | 0.153 | hoxc8a | -0.073 |
| emx2 | 0.150 | pou3f1 | -0.073 |
| si:ch211-251b21.1 | 0.143 | hoxd9a | -0.072 |
| otx1 | 0.133 | calm2a | -0.072 |
| hmga2 | 0.132 | ubb | -0.071 |
| celf2 | 0.130 | lrrn1 | -0.069 |
| fam19a5a | 0.129 | hoxb10a | -0.069 |
| pcdh10a | 0.128 | serinc5 | -0.069 |