| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| eomesa | 0.234 | gmps | -0.076 |
| emx3 | 0.195 | smim29 | -0.076 |
| tbr1b | 0.190 | gpr143 | -0.073 |
| sstr1a | 0.187 | pttg1ipb | -0.073 |
| LOC103909284 | 0.169 | gstp1 | -0.071 |
| BX649628.1 | 0.164 | paics | -0.070 |
| LOC108180805 | 0.158 | si:dkey-21a6.5 | -0.070 |
| SHISAL2A | 0.156 | impdh1b | -0.068 |
| pax6a | 0.155 | actb2 | -0.065 |
| ek1 | 0.153 | agtrap | -0.061 |
| gdf7 | 0.152 | tspan36 | -0.060 |
| CU467822.1 | 0.151 | syngr1a | -0.060 |
| BX936298.2 | 0.151 | slc2a15a | -0.060 |
| fezf1 | 0.150 | akr1b1 | -0.058 |
| LOC110437988 | 0.150 | atox1 | -0.058 |
| slc2a11l | 0.148 | pts | -0.058 |
| epm2a | 0.148 | rnaseka | -0.056 |
| stmn1b | 0.147 | vamp3 | -0.056 |
| CDHR1 (1 of many) | 0.147 | abracl | -0.055 |
| elavl3 | 0.147 | cyb5a | -0.054 |
| gpm6aa | 0.147 | rab38 | -0.053 |
| fezf2 | 0.146 | trpm1b | -0.053 |
| tuba1c | 0.142 | pcbd1 | -0.052 |
| syt1a | 0.142 | gch2 | -0.052 |
| ank3a | 0.142 | pfn1 | -0.052 |
| fez1 | 0.141 | cst14a.2 | -0.051 |
| tbr1a | 0.141 | tspan10 | -0.051 |
| LO017848.1 | 0.141 | rab32a | -0.051 |
| hgfb | 0.141 | LOC103910009 | -0.051 |
| ptmaa | 0.140 | qdpra | -0.051 |
| islr2 | 0.140 | prpsap1 | -0.051 |
| bhlhe22 | 0.139 | glulb | -0.050 |
| gzma | 0.139 | atp6ap1b | -0.050 |
| smc1b | 0.138 | krt18b | -0.050 |
| bcl11ba | 0.137 | atp11a | -0.050 |