| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| emx3 | 0.294 | sb:cb81 | -0.095 |
| tbr1b | 0.266 | pax3a | -0.086 |
| eomesa | 0.257 | en2b | -0.083 |
| dlx1a | 0.233 | mab21l2 | -0.083 |
| dlx2a | 0.219 | hoxb3a | -0.083 |
| dlx5a | 0.218 | irx5a | -0.081 |
| fezf1 | 0.215 | si:ch211-57n23.4 | -0.081 |
| arxa | 0.201 | irx1a | -0.080 |
| dlx2b | 0.196 | si:ch73-386h18.1 | -0.080 |
| CU467822.1 | 0.170 | meis2b | -0.080 |
| CU929240.1 | 0.157 | pou3f1 | -0.079 |
| nrp2b | 0.155 | irx3a | -0.078 |
| arxb | 0.153 | pou3f2a | -0.073 |
| fezf2 | 0.153 | irx3b | -0.072 |
| ek1 | 0.144 | meis1b | -0.072 |
| mef2aa | 0.143 | pax7a | -0.071 |
| celf2 | 0.138 | znf503 | -0.068 |
| nkx2.1 | 0.136 | ephb3 | -0.067 |
| sp9 | 0.135 | msx1b | -0.065 |
| sox4a | 0.135 | hspb1 | -0.065 |
| cpne2 | 0.133 | raraa | -0.064 |
| emx1 | 0.132 | zbtb16a | -0.064 |
| dlx6a | 0.131 | lhx1a | -0.063 |
| sox1b | 0.131 | akap12b | -0.062 |
| lhx6 | 0.127 | pbx4 | -0.061 |
| neurod6b | 0.126 | mapk12b | -0.060 |
| efnb2a | 0.120 | npm1a | -0.060 |
| lhx8a | 0.120 | mir219-3 | -0.060 |
| kctd4 | 0.119 | apela | -0.060 |
| tbr1a | 0.116 | id1 | -0.060 |
| gsx2 | 0.115 | pax7b | -0.060 |
| mir7a-1 | 0.114 | XLOC-002952 | -0.059 |
| rprml | 0.110 | si:ch211-152c2.3 | -0.059 |
| islr2 | 0.107 | foxb1a | -0.058 |
| r3hdm1 | 0.106 | sox21a | -0.058 |