| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| fgf8a | 0.234 | pitx2 | -0.094 |
| gdf11 | 0.232 | ctslb | -0.088 |
| lrrc17 | 0.218 | zgc:174153 | -0.087 |
| her12 | 0.215 | bambia | -0.086 |
| hoxd12a | 0.214 | klf17 | -0.085 |
| hoxb10a | 0.213 | si:dkey-239j18.2 | -0.083 |
| nradd | 0.200 | si:dkey-269i1.4 | -0.082 |
| wnt5b | 0.199 | si:dkey-239j18.3 | -0.079 |
| tagln3b | 0.197 | epcam | -0.075 |
| hes6 | 0.194 | shisa2a | -0.075 |
| hoxc13a | 0.194 | he1.2 | -0.075 |
| fgf4 | 0.193 | fzd8b | -0.073 |
| her15.1 | 0.192 | krt91 | -0.071 |
| fn1a | 0.191 | he1.1 | -0.070 |
| hoxa10b | 0.189 | cldnh | -0.070 |
| fgf20a | 0.188 | arfgap3 | -0.069 |
| hoxd10a | 0.188 | icn | -0.068 |
| cdx4 | 0.187 | si:dkey-269i1.3 | -0.068 |
| sall4 | 0.186 | LOC108180223 | -0.067 |
| her1 | 0.185 | svopl | -0.067 |
| alpi.1 | 0.184 | wu:fa26c03 | -0.067 |
| hoxa13a | 0.179 | hopx | -0.066 |
| fgf3 | 0.177 | si:dkey-26g8.5 | -0.064 |
| si:dkey-235d18.5 | 0.173 | otx2a | -0.064 |
| her4.1 | 0.167 | si:dkey-26g8.4 | -0.064 |
| itm2cb | 0.167 | cldnb | -0.063 |
| her2 | 0.166 | gsc | -0.063 |
| hoxd13a | 0.165 | ripply1 | -0.062 |
| parvb | 0.164 | spint2 | -0.062 |
| sp5l | 0.164 | malb | -0.062 |
| XLOC-025278 | 0.163 | zgc:92380 | -0.061 |
| hoxb13a | 0.163 | si:dkey-248g15.3 | -0.061 |
| hoxb7a | 0.162 | six3b | -0.061 |
| hoxa13b | 0.162 | krt8 | -0.061 |
| XLOC-042222 | 0.162 | cdh1 | -0.060 |