| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| hoxb9a | 0.252 | col2a1a | -0.110 |
| BX001014.2 | 0.240 | col9a1a | -0.109 |
| hoxc11a | 0.235 | col9a2 | -0.102 |
| cdx4 | 0.220 | col11a2 | -0.086 |
| cfd | 0.218 | col11a1a | -0.082 |
| BX469925.3 | 0.216 | fgfbp2b | -0.081 |
| wu:fb97g03 | 0.215 | foxp4 | -0.080 |
| hoxb10a | 0.215 | foxc1b | -0.080 |
| tuba8l2 | 0.207 | col9a3 | -0.080 |
| fbln1 | 0.203 | fxyd1 | -0.076 |
| clec19a | 0.190 | cnmd | -0.074 |
| aplnr2 | 0.182 | rarga | -0.072 |
| hoxc10a | 0.178 | six1a | -0.070 |
| BX005254.3 | 0.177 | tgfb3 | -0.070 |
| hoxa11a | 0.172 | ucmab | -0.069 |
| hoxc9a | 0.172 | prss35 | -0.069 |
| hoxc6b | 0.172 | six2a | -0.068 |
| hoxa9a | 0.169 | matn1 | -0.067 |
| col5a2a | 0.169 | VIT | -0.066 |
| fbn2a.1 | 0.169 | otos | -0.066 |
| hoxc11b | 0.168 | sox9a | -0.063 |
| si:ch211-286o17.1 | 0.158 | fibina | -0.061 |
| znfl2a | 0.156 | tgfb2 | -0.058 |
| hoxd9a | 0.156 | mia | -0.058 |
| tnn | 0.154 | tox | -0.057 |
| hoxa11b | 0.152 | si:dkey-6n6.1 | -0.057 |
| hoxb1b | 0.152 | wwp2 | -0.057 |
| hoxc3a | 0.148 | AL929222.2 | -0.055 |
| hoxd10a | 0.147 | eya1 | -0.055 |
| LOC101887118 | 0.144 | gsc | -0.055 |
| cdh13 | 0.140 | acana | -0.055 |
| si:dkey-12j5.1 | 0.139 | ckbb | -0.054 |
| zmp:0000000846 | 0.138 | cldn11a | -0.054 |
| hoxb7a | 0.136 | klf2a | -0.053 |
| si:ch211-191i18.2 | 0.135 | hey1 | -0.053 |