| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| tmeff2b | 0.146 | hoxb9a | -0.063 |
| phox2a | 0.136 | hoxa9a | -0.053 |
| tbx20 | 0.134 | thsd7aa | -0.047 |
| tbx2b | 0.131 | lhx1a | -0.046 |
| phox2bb | 0.124 | hoxc8a | -0.044 |
| chodl | 0.116 | tuba8l3 | -0.044 |
| lmo4b | 0.114 | slc32a1 | -0.043 |
| galr1b | 0.112 | hoxb7a | -0.042 |
| tenm3 | 0.111 | hoxd9a | -0.041 |
| tbx5b | 0.107 | hoxc9a | -0.041 |
| prph | 0.107 | hoxd10a | -0.040 |
| hoxb5b | 0.101 | LOC100537384 | -0.037 |
| BX571942.1 | 0.101 | cbfa2t3 | -0.036 |
| hapln3 | 0.100 | slc6a5 | -0.036 |
| AL954322.2 | 0.100 | rbfox3a | -0.036 |
| isl2a | 0.095 | hoxb10a | -0.036 |
| hoxb5a | 0.095 | hoxb8a | -0.035 |
| shox | 0.093 | hoxa11b | -0.035 |
| tppp2 | 0.087 | nrn1a | -0.035 |
| flot2a | 0.087 | lhx5 | -0.034 |
| mfge8b | 0.087 | zgc:112994 | -0.034 |
| mpped2a | 0.084 | fabp2 | -0.034 |
| slit3 | 0.083 | hoxa9b | -0.034 |
| zeb2b | 0.081 | mbpa | -0.034 |
| efna3b | 0.079 | pax2a | -0.034 |
| XLOC-042917 | 0.078 | cldnk | -0.034 |
| efna5b | 0.078 | ebf2 | -0.033 |
| smad1 | 0.075 | zwi | -0.033 |
| zmp:0000000991 | 0.075 | robo3 | -0.033 |
| gab2 | 0.075 | olig2 | -0.033 |
| nefmb | 0.074 | foxd3 | -0.033 |
| slc10a4 | 0.074 | mnx1 | -0.033 |
| nrp1a | 0.073 | mnx2b | -0.032 |
| si:dkey-35i13.1 | 0.073 | cd59 | -0.032 |
| ptpreb | 0.072 | nhlh2 | -0.032 |