| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| helt | 0.478 | hoxb3a | -0.135 |
| otx2a | 0.274 | hoxc3a | -0.121 |
| otx2b | 0.251 | hoxb9a | -0.120 |
| hs3st1l2 | 0.207 | hoxb8a | -0.106 |
| LOC103909284 | 0.205 | hoxd3a | -0.099 |
| otx1 | 0.202 | hoxb1b | -0.098 |
| CR848047.1 | 0.188 | hoxc9a | -0.094 |
| zgc:165461 | 0.168 | meis1b | -0.093 |
| CR936482.1 | 0.167 | hoxa3a | -0.093 |
| nfia | 0.165 | si:ch73-265d7.2 | -0.092 |
| CU634008.1 | 0.163 | hoxa9a | -0.088 |
| podxl | 0.161 | hoxb7a | -0.087 |
| mbd3b | 0.158 | hoxc8a | -0.086 |
| rbp5 | 0.157 | hoxd9a | -0.086 |
| fabp7a | 0.153 | vim | -0.085 |
| CU467822.1 | 0.152 | hoxa9b | -0.081 |
| en2b | 0.144 | hoxb10a | -0.080 |
| cxcl12a | 0.141 | hoxa10b | -0.079 |
| fgfr2 | 0.140 | hoxc6b | -0.078 |
| marcksl1a | 0.139 | hoxc1a | -0.078 |
| plp1a | 0.138 | meis1a | -0.078 |
| chfr | 0.136 | ube2e3 | -0.076 |
| nr2e1 | 0.135 | ptmaa | -0.075 |
| irx1a | 0.135 | si:ch73-386h18.1 | -0.074 |
| crabp1a | 0.133 | elavl4 | -0.074 |
| si:ch211-284e13.6 | 0.132 | tshz1 | -0.074 |
| tcf7l2 | 0.131 | gng3 | -0.072 |
| gpm6bb | 0.129 | robo3 | -0.072 |
| slc1a2b | 0.127 | elavl3 | -0.072 |
| si:ch73-30b17.2 | 0.127 | stxbp1a | -0.071 |
| her4.1 | 0.126 | snap25a | -0.071 |
| ephb3a | 0.124 | meis2a | -0.070 |
| notch3 | 0.124 | sncb | -0.070 |
| ephb3 | 0.122 | stx1b | -0.070 |
| sox9b | 0.122 | jagn1a | -0.070 |