| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| helt | 0.352 | gng3 | -0.113 |
| otx2a | 0.256 | sncb | -0.111 |
| ascl1b | 0.201 | rtn1b | -0.109 |
| abhd6a | 0.181 | elavl4 | -0.103 |
| mdka | 0.180 | atp6v0cb | -0.102 |
| her15.1 | 0.178 | ywhag2 | -0.098 |
| si:ch73-21g5.7 | 0.175 | stmn2a | -0.098 |
| XLOC-003692 | 0.174 | vamp2 | -0.094 |
| otx2b | 0.174 | gpm6ab | -0.093 |
| XLOC-003689 | 0.171 | stx1b | -0.093 |
| dbx1a | 0.163 | gap43 | -0.092 |
| her4.2 | 0.159 | stxbp1a | -0.092 |
| sox19a | 0.157 | nsg2 | -0.091 |
| her4.1 | 0.157 | zgc:65894 | -0.091 |
| XLOC-003690 | 0.154 | snap25a | -0.090 |
| sox3 | 0.152 | mllt11 | -0.089 |
| zgc:165461 | 0.151 | tmsb2 | -0.087 |
| her2 | 0.149 | aplp1 | -0.086 |
| msi1 | 0.143 | calm2a | -0.085 |
| dla | 0.141 | atp6v1e1b | -0.085 |
| notch1b | 0.139 | tmem59l | -0.083 |
| si:ch211-212k18.5 | 0.138 | olfm1b | -0.081 |
| notch3 | 0.136 | ywhah | -0.081 |
| ptprz1a | 0.135 | kdm6bb | -0.080 |
| hmgb2a | 0.133 | id4 | -0.080 |
| chfr | 0.132 | csdc2a | -0.079 |
| pax3a | 0.132 | nrxn1a | -0.079 |
| tfdp2 | 0.132 | pbx1a | -0.078 |
| plp1a | 0.129 | zc4h2 | -0.078 |
| sox9b | 0.129 | syt1a | -0.077 |
| gpr37l1a | 0.129 | maptb | -0.077 |
| CR848047.1 | 0.127 | si:dkeyp-75h12.5 | -0.077 |
| hmgb2b | 0.126 | gng2 | -0.077 |
| cep112 | 0.125 | rnasekb | -0.076 |
| otx1 | 0.124 | atp1a3a | -0.076 |