| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| shhb | 0.634 | ptmaa | -0.178 |
| spon1b | 0.621 | elavl3 | -0.158 |
| ntn1b | 0.620 | hoxb9a | -0.156 |
| slit1b | 0.556 | gas1b | -0.146 |
| arxa | 0.545 | pax3a | -0.143 |
| foxa1 | 0.539 | ptmab | -0.139 |
| clu | 0.536 | stmn1b | -0.134 |
| foxa2 | 0.527 | hoxb3a | -0.130 |
| vasna | 0.518 | sp8b | -0.125 |
| ctgfa | 0.497 | tmsb4x | -0.122 |
| slit2 | 0.492 | gpm6ab | -0.122 |
| si:dkey-208c12.2 | 0.487 | myt1b | -0.121 |
| tmem88b | 0.477 | rtn1a | -0.121 |
| sulf1 | 0.458 | gng3 | -0.120 |
| myl9a | 0.454 | hoxc3a | -0.119 |
| sparcl1 | 0.436 | cadm3 | -0.119 |
| cyr61l2 | 0.431 | hoxb8a | -0.118 |
| scospondin | 0.428 | stxbp1a | -0.116 |
| trabd2b | 0.425 | elavl4 | -0.114 |
| wnt4b | 0.425 | hoxd3a | -0.114 |
| col9a3 | 0.420 | stx1b | -0.114 |
| npr3 | 0.419 | tmeff1b | -0.114 |
| foxa | 0.399 | pax6a | -0.111 |
| col8a1a | 0.393 | hnrnpaba | -0.111 |
| lcn15 | 0.389 | tmsb | -0.110 |
| col9a2 | 0.388 | vamp2 | -0.110 |
| lmx1bb | 0.380 | sncb | -0.109 |
| aplnr2 | 0.379 | si:dkey-276j7.1 | -0.109 |
| spon1a | 0.371 | ywhah | -0.109 |
| loxl5b | 0.364 | hoxa9a | -0.108 |
| gpc5b | 0.362 | snap25a | -0.107 |
| ptgs2a | 0.354 | rtn1b | -0.106 |
| metrnla | 0.353 | pax6b | -0.105 |
| BX908782.3 | 0.352 | calm2b | -0.105 |
| optc | 0.344 | nes | -0.102 |