| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| shhb | 0.639 | cyt1 | -0.299 |
| sox2 | 0.444 | cyt1l | -0.261 |
| foxa2 | 0.422 | si:dkey-16p21.8 | -0.221 |
| pitx1 | 0.396 | zgc:175088 | -0.206 |
| sox19b | 0.393 | krt5 | -0.205 |
| ptch2 | 0.354 | krtt1c19e | -0.202 |
| fxyd1 | 0.345 | col2a1b | -0.201 |
| wnt11r | 0.340 | rbp4 | -0.191 |
| inhbaa | 0.335 | col1a2 | -0.184 |
| si:dkey-208c12.2 | 0.333 | thy1 | -0.183 |
| pitx2 | 0.332 | col11a1a | -0.179 |
| fgfrl1b | 0.323 | lgals1l1 | -0.179 |
| fabp2 | 0.317 | si:dkey-33c14.3 | -0.177 |
| ociad2 | 0.312 | ecrg4b | -0.177 |
| anos1a | 0.285 | col5a1 | -0.171 |
| sostdc1a | 0.272 | col1a1b | -0.171 |
| si:busm1-71b9.3 | 0.272 | aep1 | -0.165 |
| inka1a | 0.271 | tfap2a | -0.165 |
| fgfrl1a | 0.269 | col1a1a | -0.165 |
| ephb4a | 0.264 | spaca4l | -0.164 |
| icn | 0.259 | krt4 | -0.162 |
| zgc:163121 | 0.257 | zgc:136930 | -0.161 |
| krt18a.1 | 0.257 | kera | -0.159 |
| si:ch211-51i16.1 | 0.250 | wu:fa03e10 | -0.156 |
| nkx3.3 | 0.248 | pfn1 | -0.153 |
| dnmt3bb.1 | 0.248 | si:ch211-166a6.5 | -0.153 |
| klf5l | 0.242 | ptgdsb.1 | -0.153 |
| sox4b | 0.230 | sult2st1 | -0.153 |
| crygm2d20 | 0.229 | col14a1b | -0.151 |
| sema3bl | 0.228 | si:dkey-183i3.5 | -0.150 |
| fam167b | 0.226 | pleca | -0.149 |
| ccnd2a | 0.225 | hdlbpa | -0.147 |
| artnb | 0.222 | actb2 | -0.147 |
| rpz5 | 0.210 | DSG2 | -0.144 |
| foxa1 | 0.210 | col17a1a | -0.143 |