| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| nkx2.4b | 0.327 | meis1b | -0.055 |
| si:dkeyp-110a12.4 | 0.282 | mab21l1 | -0.053 |
| nkx2.4a | 0.268 | mab21l2 | -0.050 |
| shhb | 0.266 | pax3a | -0.049 |
| rx3 | 0.252 | hoxb3a | -0.049 |
| nkx2.2b | 0.247 | marcksl1b | -0.046 |
| fzd5 | 0.197 | gas1b | -0.046 |
| slc1a3b | 0.191 | elavl3 | -0.046 |
| id3 | 0.166 | stmn1b | -0.044 |
| snai3 | 0.158 | lhx9 | -0.043 |
| il34 | 0.146 | gas1a | -0.041 |
| six6b | 0.143 | scrt2 | -0.041 |
| eno4 | 0.142 | ebf3a | -0.041 |
| vax1 | 0.137 | meis2a | -0.041 |
| six6a | 0.137 | pax7a | -0.038 |
| fgfrl1a | 0.136 | tmsb | -0.038 |
| zgc:174888 | 0.125 | zic2a | -0.037 |
| cxcl12b | 0.124 | gpm6ab | -0.037 |
| nkx2.1 | 0.123 | rarga | -0.036 |
| scube1 | 0.123 | msx1b | -0.036 |
| ptch2 | 0.121 | sp8b | -0.036 |
| lft1 | 0.120 | elavl4 | -0.036 |
| ntn1b | 0.120 | meis2b | -0.036 |
| six3b | 0.117 | rbfox1 | -0.036 |
| sox1b | 0.117 | ptmaa | -0.036 |
| chl1a | 0.116 | BX927258.1 | -0.035 |
| vax2 | 0.115 | zic2b | -0.035 |
| prdx1 | 0.113 | zc4h2 | -0.035 |
| slc9a3r1a | 0.111 | tfap2a | -0.035 |
| CABZ01030107.1 | 0.111 | en2b | -0.035 |
| fezf1 | 0.111 | raraa | -0.034 |
| nkx2.2a | 0.110 | zic3 | -0.034 |
| six3a | 0.108 | rtn1a | -0.034 |
| foxa2 | 0.108 | pax7b | -0.034 |
| nkx2.9 | 0.107 | pax6a | -0.034 |