| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| scg2a | 0.178 | pax3a | -0.112 |
| otx2a | 0.160 | mdka | -0.105 |
| nkx2.4b | 0.151 | gas1b | -0.100 |
| pkd2l1 | 0.149 | col4a5 | -0.100 |
| pkd1l2a | 0.146 | si:ch73-265d7.2 | -0.100 |
| ptprna | 0.146 | prss35 | -0.099 |
| scg2b | 0.146 | cdx4 | -0.096 |
| nkx2.4a | 0.145 | col4a6 | -0.096 |
| sox1b | 0.143 | msx1b | -0.093 |
| gad2 | 0.141 | gfap | -0.093 |
| sox1a | 0.140 | hoxc3a | -0.091 |
| tal2 | 0.137 | pleca | -0.086 |
| egr4 | 0.135 | hoxa10b | -0.085 |
| myo3b | 0.134 | cldn19 | -0.084 |
| insm1a | 0.131 | tes | -0.080 |
| shisal1a | 0.130 | hoxd9a | -0.079 |
| emx2 | 0.130 | gas1a | -0.078 |
| lrfn4b | 0.128 | slc1a3a | -0.077 |
| c2cd4a | 0.125 | meis1b | -0.077 |
| bsx | 0.116 | col18a1a | -0.076 |
| gad1b | 0.116 | hoxc6b | -0.076 |
| eps8l2 | 0.114 | endouc | -0.075 |
| slc18a2 | 0.113 | hoxc9a | -0.074 |
| scgn | 0.112 | hoxd12a | -0.074 |
| prdx1 | 0.112 | hoxa9b | -0.074 |
| foxa2 | 0.112 | XLOC-001964 | -0.073 |
| RASGRF1 | 0.112 | pax6b | -0.072 |
| otx1 | 0.111 | BX001014.2 | -0.072 |
| urp1 | 0.109 | hoxb9a | -0.071 |
| rtn1a | 0.109 | hoxb1b | -0.071 |
| si:ch1073-70f20.1 | 0.107 | hoxa2b | -0.070 |
| map2k1 | 0.107 | col28a2a | -0.070 |
| atp6v0cb | 0.106 | her12 | -0.070 |
| dmrta2 | 0.105 | BX005254.3 | -0.069 |
| esm1 | 0.105 | meis1a | -0.069 |