| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| cdx4 | 0.506 | gapdhs | -0.252 |
| hoxb10a | 0.451 | eef1da | -0.251 |
| apoc1 | 0.447 | krtt1c19e | -0.231 |
| BX005254.3 | 0.444 | rplp2 | -0.230 |
| hoxb7a | 0.429 | krt91 | -0.225 |
| BX927258.1 | 0.429 | rbp4 | -0.209 |
| hoxc8a | 0.424 | cxl34b.11 | -0.208 |
| insl5a | 0.413 | si:dkey-33c14.3 | -0.205 |
| vcana | 0.409 | zgc:136930 | -0.198 |
| hoxb9a | 0.407 | anxa1a | -0.196 |
| hoxd9a | 0.395 | ahcy | -0.196 |
| LOC101882251 | 0.395 | capns1a | -0.191 |
| sp8b | 0.393 | aqp3a | -0.191 |
| XLOC-032526 | 0.388 | si:dkey-183i3.5 | -0.188 |
| hoxc3a | 0.388 | col14a1b | -0.185 |
| tmeff1b | 0.380 | epgn | -0.185 |
| sp8a | 0.375 | col1a1b | -0.185 |
| emx2 | 0.375 | pycard | -0.181 |
| hoxc6b | 0.371 | ak1 | -0.178 |
| XLOC-001603 | 0.347 | capgb | -0.178 |
| tpm4a | 0.346 | anxa2a | -0.176 |
| asb11 | 0.346 | igfbp7 | -0.174 |
| hspb1 | 0.341 | pvalb1 | -0.174 |
| prickle1a | 0.337 | s100v2 | -0.173 |
| hoxa10b | 0.332 | rhbg | -0.171 |
| hoxd10a | 0.330 | col1a2 | -0.170 |
| ubxn8 | 0.329 | sparc | -0.167 |
| mllt3 | 0.328 | pvalb2 | -0.166 |
| lin28a | 0.322 | itm2bb | -0.165 |
| hoxa9b | 0.322 | col17a1a | -0.162 |
| crabp2a | 0.320 | krt5 | -0.161 |
| nid2a | 0.316 | col1a1a | -0.161 |
| XLOC-039121 | 0.314 | cotl1 | -0.161 |
| msx1b | 0.313 | wu:fa03e10 | -0.159 |
| hoxd12a | 0.311 | si:ch211-105c13.3 | -0.159 |