| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| CR848047.1 | 0.136 | hoxc3a | -0.087 |
| CR751602.2 | 0.134 | hoxb9a | -0.084 |
| nr2f1b | 0.131 | hoxa9a | -0.075 |
| CU634008.1 | 0.128 | hoxc9a | -0.073 |
| irx2a | 0.119 | hoxd9a | -0.070 |
| irx1a | 0.118 | hoxb8a | -0.069 |
| sfrp5 | 0.117 | hoxb10a | -0.068 |
| en2b | 0.117 | hoxa9b | -0.068 |
| CU467822.1 | 0.116 | hoxa10b | -0.067 |
| nfia | 0.110 | hoxd3a | -0.067 |
| lrrn1 | 0.109 | vim | -0.067 |
| gpm6bb | 0.109 | hoxb7a | -0.062 |
| podxl | 0.108 | myt1b | -0.061 |
| chfr | 0.107 | hoxb3a | -0.061 |
| notch3 | 0.107 | hoxd10a | -0.060 |
| fgfr2 | 0.106 | hoxa11b | -0.059 |
| sox3 | 0.106 | hoxa3a | -0.059 |
| fabp7a | 0.105 | nhlh2 | -0.059 |
| plp1a | 0.104 | hoxb1b | -0.057 |
| si:ch73-30b17.2 | 0.100 | pik3r3b | -0.057 |
| msi1 | 0.100 | LOC100537384 | -0.057 |
| her6 | 0.100 | jagn1a | -0.056 |
| nkx2.9 | 0.099 | tuba8l3 | -0.055 |
| zgc:165461 | 0.097 | hoxc6b | -0.054 |
| cd82a | 0.096 | robo3 | -0.054 |
| cyp26b1 | 0.096 | hoxd12a | -0.054 |
| masp1 | 0.094 | elavl3 | -0.054 |
| slc6a1b | 0.094 | hoxc8a | -0.053 |
| nrarpb | 0.093 | hoxc10a | -0.052 |
| cldn5a | 0.093 | scrt2 | -0.052 |
| ntn1a | 0.092 | cldn19 | -0.051 |
| tnc | 0.090 | ptmaa | -0.050 |
| npas1 | 0.089 | serinc5 | -0.050 |
| helt | 0.089 | cdx4 | -0.049 |
| XLOC-003690 | 0.088 | onecut1 | -0.047 |