| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| hoxb5b | 0.453 | en2b | -0.073 |
| hoxc4a | 0.416 | otx1 | -0.056 |
| hoxb5a | 0.354 | otx2a | -0.056 |
| hoxd4a | 0.316 | tcf7l2 | -0.056 |
| hoxa3a | 0.292 | otx2b | -0.055 |
| hoxc3a | 0.289 | si:ch211-152c2.3 | -0.054 |
| hoxb6b | 0.288 | myt1la | -0.053 |
| hoxb3a | 0.285 | celf2 | -0.053 |
| hoxb6a | 0.284 | nr2f2 | -0.051 |
| hoxc5a | 0.256 | stm | -0.050 |
| rxrga | 0.256 | apoeb | -0.050 |
| hoxa5a | 0.255 | lef1 | -0.049 |
| slc1a3a | 0.239 | aldob | -0.049 |
| hoxb1b | 0.232 | en2a | -0.049 |
| raraa | 0.224 | CR751602.2 | -0.049 |
| dhrs3b | 0.220 | apoc1 | -0.049 |
| hoxb8a | 0.209 | pcp4a | -0.049 |
| vim | 0.176 | ppp1r14ba | -0.048 |
| rhbdl3 | 0.167 | islr2 | -0.048 |
| hoxd3a | 0.156 | si:dkey-81l17.6 | -0.047 |
| meis3 | 0.156 | hspb1 | -0.047 |
| nr2f6b | 0.150 | cbx1b | -0.046 |
| hoxb8b | 0.147 | slc6a1b | -0.045 |
| rbp5 | 0.147 | emx2 | -0.045 |
| CR751227.2 | 0.146 | slc6a1a | -0.045 |
| meis1b | 0.142 | irx7 | -0.044 |
| wnt11r | 0.141 | sfrp1a | -0.044 |
| rxrgb | 0.133 | sox1b | -0.044 |
| meis2b | 0.130 | xpr1a | -0.044 |
| si:ch211-57n23.4 | 0.130 | polr3gla | -0.043 |
| tshz1 | 0.130 | ckmt1 | -0.043 |
| crabp1b | 0.128 | pou5f3 | -0.043 |
| cygb1 | 0.122 | cxcl12a | -0.043 |
| gfap | 0.115 | camk2n1a | -0.043 |
| crabp2a | 0.115 | foxg1a | -0.043 |