| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| hoxb5b | 0.247 | col9a1a | -0.092 |
| hoxb8a | 0.247 | col2a1a | -0.089 |
| meis3 | 0.223 | col9a2 | -0.087 |
| hoxc3a | 0.215 | cnmd | -0.086 |
| hoxb1b | 0.212 | col2a1b | -0.083 |
| hoxb3a | 0.186 | fibina | -0.082 |
| hoxb6b | 0.181 | col9a3 | -0.081 |
| hoxb5a | 0.180 | fgfbp2b | -0.077 |
| hoxb6a | 0.179 | rarga | -0.077 |
| tmem88b | 0.157 | foxc1b | -0.072 |
| meis2b | 0.148 | col11a2 | -0.068 |
| hoxa3a | 0.147 | matn4 | -0.068 |
| hoxc4a | 0.146 | sox9a | -0.064 |
| hoxb8b | 0.142 | bhmt | -0.063 |
| CABZ01075068.1 | 0.138 | ecrg4a | -0.062 |
| dhrs3b | 0.136 | eef1da | -0.062 |
| rdh10a | 0.134 | col11a1a | -0.061 |
| cyp26a1 | 0.131 | sparc | -0.061 |
| hoxc8a | 0.126 | VIT | -0.061 |
| isl2b | 0.122 | col11a1b | -0.060 |
| hoxc6a | 0.122 | six1a | -0.057 |
| tmem98 | 0.121 | cthrc1a | -0.057 |
| BX469925.3 | 0.121 | dlx5a | -0.057 |
| meis1b | 0.120 | rbp4 | -0.057 |
| jam2b | 0.120 | fxyd1 | -0.055 |
| aldh1a2 | 0.120 | otos | -0.053 |
| meis1a | 0.119 | col8a2 | -0.052 |
| cyp27c1 | 0.119 | wfdc2 | -0.051 |
| wnt2 | 0.115 | ucmab | -0.051 |
| tmem108 | 0.111 | dlx4a | -0.051 |
| col7a1l | 0.110 | cdh11 | -0.050 |
| prdm1a | 0.109 | rplp2 | -0.050 |
| hoxb2a | 0.109 | dlx3b | -0.050 |
| hoxb7a | 0.104 | epyc | -0.050 |
| CR751227.2 | 0.103 | mab21l2 | -0.050 |