| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| hoxb3a | 0.196 | foxg1b | -0.023 |
| hoxd3a | 0.144 | rorb | -0.022 |
| hoxc4a | 0.133 | NC-002333.4 | -0.022 |
| hoxb5a | 0.130 | pax6a | -0.021 |
| hoxc3a | 0.124 | wu:fi46h04 | -0.019 |
| hoxd4a | 0.122 | cadm3 | -0.018 |
| pmp22a | 0.113 | anp32e | -0.018 |
| hoxb8a | 0.101 | six6b | -0.017 |
| hoxc1a | 0.098 | fzd5 | -0.016 |
| hoxa5a | 0.092 | pdap1a | -0.016 |
| meis1a | 0.091 | shisa2a | -0.014 |
| tuba8l3 | 0.091 | pax6b | -0.014 |
| hand2 | 0.091 | zgc:153405 | -0.014 |
| hoxb9a | 0.091 | ephb6 | -0.014 |
| hoxb5b | 0.090 | zgc:110216 | -0.014 |
| hoxc8a | 0.089 | smarcc1a | -0.014 |
| si:dkey-261h17.1 | 0.088 | XLOC-042899 | -0.013 |
| hoxb6a | 0.088 | hmx4 | -0.013 |
| hoxc9a | 0.086 | chaf1a | -0.013 |
| hapln1a | 0.085 | mybbp1a | -0.013 |
| hoxb1b | 0.084 | rrm1 | -0.013 |
| hoxa9b | 0.084 | kpnb3 | -0.013 |
| col1a2 | 0.082 | mybl1 | -0.013 |
| col5a1 | 0.082 | kmt5ab | -0.013 |
| hoxb6b | 0.080 | si:dkey-66i24.9 | -0.012 |
| barx1 | 0.079 | mt-co2 | -0.012 |
| vwde | 0.079 | mcm6 | -0.012 |
| col5a2a | 0.078 | XLOC-003718 | -0.012 |
| hoxa9a | 0.078 | si:dkey-108k21.10 | -0.012 |
| mfap2 | 0.076 | zmp:0000000624 | -0.012 |
| ms4a17a.9 | 0.076 | nsd2 | -0.012 |
| hoxb2a | 0.075 | pax10 | -0.012 |
| cyp1c1 | 0.075 | mtdhb | -0.012 |
| rarga | 0.074 | tpx2 | -0.012 |
| ms4a17a.11 | 0.074 | mpp6b | -0.012 |