| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| shha | 0.527 | gas1b | -0.135 |
| foxa | 0.476 | pax3a | -0.120 |
| si:dkey-208c12.2 | 0.476 | mdka | -0.115 |
| shhb | 0.461 | hoxb9a | -0.114 |
| spon1b | 0.460 | ptmaa | -0.114 |
| ntn1b | 0.443 | tmsb4x | -0.106 |
| arxa | 0.411 | mdkb | -0.103 |
| foxa1 | 0.407 | stmn1b | -0.103 |
| aplnr2 | 0.374 | sp8b | -0.102 |
| tmem88b | 0.356 | ckbb | -0.102 |
| slit1b | 0.348 | cadm3 | -0.099 |
| urp2 | 0.346 | elavl4 | -0.099 |
| vasna | 0.343 | pax6a | -0.097 |
| sulf1 | 0.339 | boc | -0.096 |
| col8a1a | 0.335 | calm2b | -0.092 |
| clu | 0.334 | hoxb8a | -0.091 |
| col9a2 | 0.318 | hoxa9a | -0.090 |
| slit2 | 0.309 | pax6b | -0.090 |
| optc | 0.309 | elavl3 | -0.089 |
| sparcl1 | 0.308 | hoxd3a | -0.088 |
| ctgfa | 0.297 | si:ch211-251b21.1 | -0.088 |
| scospondin | 0.294 | gas1a | -0.086 |
| col9a3 | 0.292 | onecut1 | -0.085 |
| loxl5b | 0.287 | rbfox3a | -0.084 |
| scinlb | 0.286 | hoxc3a | -0.084 |
| lmx1bb | 0.285 | sp8a | -0.084 |
| col9a1b | 0.283 | tuba8l3 | -0.084 |
| myl9a | 0.282 | COX3 | -0.083 |
| tbata | 0.273 | hoxb3a | -0.083 |
| si:ch1073-70f20.1 | 0.271 | mab21l2 | -0.083 |
| metrnla | 0.269 | golga7ba | -0.083 |
| cyr61l2 | 0.267 | scrt2 | -0.082 |
| nkx2.2b | 0.267 | cplx2 | -0.081 |
| urp1 | 0.265 | gng3 | -0.080 |
| npr3 | 0.265 | hoxc4a | -0.080 |