| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| pitx2 | 0.333 | sox3 | -0.194 |
| dkk1b | 0.314 | id1 | -0.158 |
| lhx1a | 0.311 | sox19a | -0.133 |
| gata6 | 0.264 | cxcr4b | -0.128 |
| irx3a | 0.258 | aldob | -0.102 |
| dusp4 | 0.250 | asb11 | -0.096 |
| fgf8a | 0.249 | zic2b | -0.096 |
| osr1 | 0.239 | sb:cb81 | -0.089 |
| foxa | 0.236 | si:ch1073-80i24.3 | -0.088 |
| gata5 | 0.234 | inka1a | -0.088 |
| lft2 | 0.234 | foxd5 | -0.080 |
| mespab | 0.230 | cited4b | -0.078 |
| efnb2b | 0.229 | si:dkey-56m19.5 | -0.078 |
| sox32 | 0.228 | cxcr4a | -0.072 |
| lft1 | 0.226 | mych | -0.067 |
| fgf3 | 0.225 | pfkfb4b | -0.067 |
| zic2a | 0.219 | sox2 | -0.065 |
| elovl6 | 0.212 | polr3gla | -0.059 |
| gsc | 0.208 | shisa2a | -0.059 |
| fgf17 | 0.208 | alcamb | -0.058 |
| efna1a | 0.207 | foxh1 | -0.058 |
| trib3 | 0.206 | atp1b1a | -0.057 |
| FP102169.1 | 0.202 | snai2 | -0.057 |
| fscn1a | 0.200 | zgc:64022 | -0.057 |
| ism1 | 0.200 | nnr | -0.056 |
| foxa3 | 0.198 | add3b | -0.056 |
| flrt3 | 0.194 | hirip3 | -0.056 |
| BX927327.1 | 0.194 | gpd1b | -0.055 |
| sp5a | 0.193 | si:ch211-170d8.2 | -0.054 |
| cyp27c1 | 0.192 | pkdccb | -0.054 |
| ndr2 | 0.192 | mex3b | -0.053 |
| wnt11f2 | 0.191 | cx43.4 | -0.052 |
| rdh10a | 0.190 | si:ch73-1a9.3 | -0.051 |
| tbxta | 0.184 | si:ch211-152c2.3 | -0.051 |
| msgn1 | 0.184 | crabp2b | -0.050 |